Analysis of interatomic Contacts of Structural Units in PDB entry:
6JVU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JVU entry

There are 6 chains in PDB entry 6JVU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	HIS 259
B	GLU 5	ASP 257
C	LEU 6	ASP 257
D	GLU 5	HIS 259
E	ASP 7	ASP 257
F	LEU 6	TRP 119

There are 48 helices in PDB entry 6JVU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	24	Right-handed alpha
Helix 2	AA2	A	27	35	Right-handed alpha
Helix 3	AA3	A	40	54	Right-handed alpha
Helix 4	AA4	A	59	74	Right-handed alpha
Helix 5	AA5	A	75	92	Right-handed alpha
Helix 6	AA6	A	99	105	Right-handed alpha
Helix 7	AA7	A	105	123	Right-handed alpha
Helix 8	AA8	A	125	141	Right-handed alpha
Helix 9	AA9	B	6	24	Right-handed alpha
Helix 10	AB1	B	27	35	Right-handed alpha
Helix 11	AB2	B	40	54	Right-handed alpha
Helix 12	AB3	B	59	74	Right-handed alpha
Helix 13	AB4	B	75	92	Right-handed alpha
Helix 14	AB5	B	99	105	Right-handed alpha
Helix 15	AB6	B	105	123	Right-handed alpha
Helix 16	AB7	B	125	141	Right-handed alpha
Helix 17	AB8	C	7	24	Right-handed alpha
Helix 18	AB9	C	27	35	Right-handed alpha
Helix 19	AC1	C	40	54	Right-handed alpha
Helix 20	AC2	C	59	74	Right-handed alpha
Helix 21	AC3	C	75	92	Right-handed alpha
Helix 22	AC4	C	99	105	Right-handed alpha
Helix 23	AC5	C	105	123	Right-handed alpha
Helix 24	AC6	C	125	141	Right-handed alpha
Helix 25	AC7	D	6	24	Right-handed alpha
Helix 26	AC8	D	27	35	Right-handed alpha
Helix 27	AC9	D	40	54	Right-handed alpha
Helix 28	AD1	D	59	74	Right-handed alpha
Helix 29	AD2	D	75	92	Right-handed alpha
Helix 30	AD3	D	99	105	Right-handed alpha
Helix 31	AD4	D	105	123	Right-handed alpha
Helix 32	AD5	D	125	141	Right-handed alpha
Helix 33	AD6	E	8	24	Right-handed alpha
Helix 34	AD7	E	27	35	Right-handed alpha
Helix 35	AD8	E	40	54	Right-handed alpha
Helix 36	AD9	E	59	74	Right-handed alpha
Helix 37	AE1	E	75	92	Right-handed alpha
Helix 38	AE2	E	99	105	Right-handed alpha
Helix 39	AE3	E	105	123	Right-handed alpha
Helix 40	AE4	E	125	141	Right-handed alpha
Helix 41	AE5	F	7	24	Right-handed alpha
Helix 42	AE6	F	27	35	Right-handed alpha
Helix 43	AE7	F	40	54	Right-handed alpha
Helix 44	AE8	F	59	74	Right-handed alpha
Helix 45	AE9	F	75	92	Right-handed alpha
Helix 46	AF1	F	99	105	Right-handed alpha
Helix 47	AF2	F	105	123	Right-handed alpha
Helix 48	AF3	F	125	141	Right-handed alpha

There are 25 sheets in PDB entry 6JVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	144	first strand
Strand 2	A	163	164	parallel
Strand 3	A	181	182	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	169	170	parallel
Strand 3	A	195	196	parallel
Strand 4	A	213	214	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	175	177	parallel
Strand 3	A	201	202	parallel
Strand 4	A	219	220	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	225	226	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	242	245	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	144	first strand
Strand 2	B	163	164	parallel
Strand 3	B	181	182	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	169	170	parallel
Strand 3	B	195	196	parallel
Strand 4	B	213	214	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	175	176	parallel
Strand 3	B	201	202	parallel
Strand 4	B	219	220	parallel
Strand 5	B	235	237	parallel
Strand 6	B	242	245	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	225	226	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	144	first strand
Strand 2	C	162	164	parallel
Strand 3	C	181	182	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	169	170	parallel
Strand 3	C	195	196	parallel
Strand 4	C	213	214	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	175	177	parallel
Strand 3	C	201	202	parallel
Strand 4	C	219	220	parallel
Strand 5	C	235	237	parallel
Strand 6	C	242	245	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	225	226	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	162	164	parallel
Strand 3	D	181	182	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	169	170	parallel
Strand 3	D	195	196	parallel
Strand 4	D	213	214	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	156	first strand
Strand 2	D	175	176	parallel
Strand 3	D	201	202	parallel
Strand 4	D	219	220	parallel
Strand 5	D	235	237	parallel
Strand 6	D	242	245	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	225	226	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	144	first strand
Strand 2	E	162	164	parallel
Strand 3	E	181	182	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	169	170	parallel
Strand 3	E	195	196	parallel
Strand 4	E	213	214	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	157	first strand
Strand 2	E	175	177	parallel
Strand 3	E	201	202	parallel
Strand 4	E	219	220	parallel
Strand 5	E	235	237	parallel
Strand 6	E	242	245	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	225	226	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	144	first strand
Strand 2	F	162	164	parallel
Strand 3	F	181	182	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	150	first strand
Strand 2	F	169	170	parallel
Strand 3	F	195	196	parallel
Strand 4	F	213	214	parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	157	first strand
Strand 2	F	175	177	parallel
Strand 3	F	201	202	parallel
Strand 4	F	219	220	parallel
Strand 5	F	235	237	parallel
Strand 6	F	242	245	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	208	first strand
Strand 2	F	225	226	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JVU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JVU