Analysis of interatomic Contacts of Structural Units in PDB entry:
6JVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JVV entry

There are 2 chains in PDB entry 6JVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 276
B
 MET 1GLY 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6JVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed alpha
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
44 56Right-handed alpha
Helix 4
AA4
A
57 59Right-handed 310
Helix 5
AA5
A
65 67Right-handed 310
Helix 6
AA6
A
108 110Right-handed 310
Helix 7
AA7
A
147 153Right-handed 310
Helix 8
AA8
A
172 177Right-handed 310
Helix 9
AA9
A
192 194Right-handed 310
Helix 10
AB1
A
196 199Right-handed 310
Helix 11
AB2
A
217 219Right-handed 310
Helix 12
AB3
A
222 234Right-handed alpha
Helix 13
AB4
B
22 27Right-handed alpha
Helix 14
AB5
B
36 44Right-handed alpha
Helix 15
AB6
B
44 56Right-handed alpha
Helix 16
AB7
B
57 59Right-handed 310
Helix 17
AB8
B
65 67Right-handed 310
Helix 18
AB9
B
108 110Right-handed 310
Helix 19
AC1
B
147 153Right-handed 310
Helix 20
AC2
B
172 177Right-handed 310
Helix 21
AC3
B
192 194Right-handed 310
Helix 22
AC4
B
196 199Right-handed 310
Helix 23
AC5
B
217 219Right-handed 310
Helix 24
AC6
B
222 234Right-handed alpha
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There are 8 sheets in PDB entry 6JVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
18 21anti-parallel
Strand 3
A
10 15anti-parallel
Strand 4
A
2 6anti-parallel
Strand 5
A
182 190anti-parallel
Strand 6
A
155 162anti-parallel
Strand 7
A
133 139anti-parallel
Strand 8
A
241 243anti-parallel
Strand 9
A
79 81parallel
Strand 10
A
105 107anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
182 190anti-parallel
Strand 4
A
112 113parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
267 275parallel
Strand 3
A
258 263anti-parallel
Strand 4
A
201 206anti-parallel
Strand 5
A
209 215anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
129 131anti-parallel
Strand 3
A
251 253anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
18 21anti-parallel
Strand 3
B
10 15anti-parallel
Strand 4
B
2 6anti-parallel
Strand 5
B
182 190anti-parallel
Strand 6
B
155 162anti-parallel
Strand 7
B
133 139anti-parallel
Strand 8
B
241 243anti-parallel
Strand 9
B
79 81parallel
Strand 10
B
105 107anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
182 190anti-parallel
Strand 4
B
112 113parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
267 275parallel
Strand 3
B
258 263anti-parallel
Strand 4
B
201 206anti-parallel
Strand 5
B
209 215anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
129 131anti-parallel
Strand 3
B
251 253anti-parallel
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