Analysis of interatomic Contacts of Structural Units in PDB entry:
6JW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JW8 entry

There are 2 chains in PDB entry 6JW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4GLY 362
B
 PRO 4VAL 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6JW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
38 49Right-handed alpha
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
75 77Right-handed 310
Helix 5
AA5
A
78 89Right-handed alpha
Helix 6
AA6
A
102 116Right-handed alpha
Helix 7
AA7
A
124 128Right-handed 310
Helix 8
AA8
A
129 140Right-handed alpha
Helix 9
AA9
A
141 146Right-handed alpha
Helix 10
AB1
A
162 166Right-handed 310
Helix 11
AB2
A
167 172Right-handed alpha
Helix 12
AB3
A
174 179Right-handed alpha
Helix 13
AB4
A
179 191Right-handed alpha
Helix 14
AB5
A
303 308Right-handed alpha
Helix 15
AB6
A
309 324Right-handed alpha
Helix 16
AB7
A
331 351Right-handed alpha
Helix 17
AB8
B
13 25Right-handed alpha
Helix 18
AB9
B
38 49Right-handed alpha
Helix 19
AC1
B
57 64Right-handed alpha
Helix 20
AC2
B
75 77Right-handed 310
Helix 21
AC3
B
78 89Right-handed alpha
Helix 22
AC4
B
102 116Right-handed alpha
Helix 23
AC5
B
124 128Right-handed 310
Helix 24
AC6
B
129 140Right-handed alpha
Helix 25
AC7
B
141 146Right-handed alpha
Helix 26
AC8
B
162 166Right-handed 310
Helix 27
AC9
B
167 172Right-handed alpha
Helix 28
AD1
B
174 179Right-handed alpha
Helix 29
AD2
B
179 191Right-handed alpha
Helix 30
AD3
B
303 308Right-handed alpha
Helix 31
AD4
B
309 324Right-handed alpha
Helix 32
AD5
B
331 351Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6JW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
29 35parallel
Strand 3
A
5 10parallel
Strand 4
A
69 72parallel
Strand 5
A
92 95parallel
Strand 6
A
120 122parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 204first strand
Strand 2
A
231 238anti-parallel
Strand 3
A
243 249anti-parallel
Strand 4
A
148 156parallel
Strand 5
A
257 264anti-parallel
Strand 6
A
268 272anti-parallel
Strand 7
B
279 283anti-parallel
Strand 8
B
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
279 283anti-parallel
Strand 3
B
268 272anti-parallel
Strand 4
B
257 264anti-parallel
Strand 5
B
148 156anti-parallel
Strand 6
B
243 249parallel
Strand 7
B
231 238anti-parallel
Strand 8
B
196 204anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
29 35parallel
Strand 3
B
5 10parallel
Strand 4
B
69 72parallel
Strand 5
B
92 95parallel
Strand 6
B
120 122parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il