Analysis of interatomic Contacts of Structural Units in PDB entry:
6JWI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JWI entry

There are 4 chains in PDB entry 6JWI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 MSE 1ARG 72
A
 ILE 113GLY 580
E
 SER 112GLY 580
G
 MSE 1LEU 71
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6JWI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
I
22 35Right-handed alpha
Helix 2
AA2
A
116 125Right-handed alpha
Helix 3
AA3
A
155 162Right-handed alpha
Helix 4
AA4
A
169 181Right-handed alpha
Helix 5
AA5
A
241 256Right-handed alpha
Helix 6
AA6
A
300 316Right-handed alpha
Helix 7
AA7
A
351 365Right-handed alpha
Helix 8
AA8
A
402 411Right-handed alpha
Helix 9
AA9
A
492 496Right-handed 310
Helix 10
AB1
A
500 515Right-handed alpha
Helix 11
AB2
A
516 525Right-handed alpha
Helix 12
AB3
A
526 536Right-handed alpha
Helix 13
AB4
A
540 553Right-handed alpha
Helix 14
AB5
A
556 566Right-handed alpha
Helix 15
AB6
A
566 580Right-handed alpha
Helix 16
AB7
E
116 125Right-handed alpha
Helix 17
AB8
E
155 162Right-handed alpha
Helix 18
AB9
E
169 181Right-handed alpha
Helix 19
AC1
E
241 256Right-handed alpha
Helix 20
AC2
E
300 316Right-handed alpha
Helix 21
AC3
E
351 365Right-handed alpha
Helix 22
AC4
E
402 411Right-handed alpha
Helix 23
AC5
E
492 496Right-handed 310
Helix 24
AC6
E
500 515Right-handed alpha
Helix 25
AC7
E
516 525Right-handed alpha
Helix 26
AC8
E
526 536Right-handed alpha
Helix 27
AC9
E
540 553Right-handed alpha
Helix 28
AD1
E
556 566Right-handed alpha
Helix 29
AD2
E
566 579Right-handed alpha
Helix 30
AD3
G
22 35Right-handed alpha
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There are 12 sheets in PDB entry 6JWI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
12 16first strand
Strand 2
I
2 6anti-parallel
Strand 3
I
66 70parallel
Strand 4
I
42 45anti-parallel
Strand 5
I
48 49anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
231 232parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
437 441parallel
Strand 3
A
449 452anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
276 285parallel
Strand 3
A
260 270anti-parallel
Strand 4
A
320 327anti-parallel
Strand 5
A
382 388parallel
Strand 6
A
394 401anti-parallel
Strand 7
A
463 469anti-parallel
Strand 8
A
236 239parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 368first strand
Strand 2
A
376 379anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
422 425anti-parallel
Strand 3
A
456 458anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
167 168first strand
Strand 2
E
231 232parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
224 226first strand
Strand 2
E
437 441parallel
Strand 3
E
449 452anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
236 239first strand
Strand 2
E
276 285parallel
Strand 3
E
260 270anti-parallel
Strand 4
E
320 328anti-parallel
Strand 5
E
382 388parallel
Strand 6
E
394 401anti-parallel
Strand 7
E
463 469anti-parallel
Strand 8
E
236 239parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
366 368first strand
Strand 2
E
376 379anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
414 416first strand
Strand 2
E
422 425anti-parallel
Strand 3
E
456 458anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 16first strand
Strand 2
G
2 7anti-parallel
Strand 3
G
66 70parallel
Strand 4
G
42 45anti-parallel
Strand 5
G
48 49anti-parallel
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