Analysis of interatomic Contacts of Structural Units in PDB entry:
6JWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JWJ entry

There are 2 chains in PDB entry 6JWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 112GLY 580
C
 MET 287MET 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6JWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 124Right-handed alpha
Helix 2
AA2
A
155 162Right-handed alpha
Helix 3
AA3
A
169 181Right-handed alpha
Helix 4
AA4
A
241 256Right-handed alpha
Helix 5
AA5
A
299 317Right-handed alpha
Helix 6
AA6
A
351 365Right-handed alpha
Helix 7
AA7
A
402 411Right-handed alpha
Helix 8
AA8
A
492 496Right-handed 310
Helix 9
AA9
A
500 513Right-handed alpha
Helix 10
AB1
A
516 525Right-handed alpha
Helix 11
AB2
A
526 536Right-handed alpha
Helix 12
AB3
A
540 553Right-handed alpha
Helix 13
AB4
A
556 566Right-handed alpha
Helix 14
AB5
A
566 578Right-handed alpha
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There are 6 sheets in PDB entry 6JWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
231 232parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
437 442parallel
Strand 3
A
448 452anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
276 285parallel
Strand 3
A
260 270anti-parallel
Strand 4
A
320 328anti-parallel
Strand 5
A
382 388parallel
Strand 6
A
394 401anti-parallel
Strand 7
A
463 469anti-parallel
Strand 8
A
236 239parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
295 297anti-parallel
Strand 3
C
298 300anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 368first strand
Strand 2
A
376 379anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
422 425anti-parallel
Strand 3
A
456 458anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il