Analysis of interatomic Contacts of Structural Units in PDB entry:
6JWN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JWN entry

There are 4 chains in PDB entry 6JWN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 28ARG 220
B
 ARG 1GLU 9
C
 GLY 28ARG 220
D
 ARG 1GLU 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6JWN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 35Right-handed alpha
Helix 2
AA2
A
39 46Right-handed alpha
Helix 3
AA3
A
96 100Right-handed 310
Helix 4
AA4
A
157 161Right-handed 310
Helix 5
AA5
C
29 35Right-handed alpha
Helix 6
AA6
C
39 46Right-handed alpha
Helix 7
AA7
C
96 100Right-handed 310
Helix 8
AA8
C
157 161Right-handed 310
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There are 6 sheets in PDB entry 6JWN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
116 117anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
200 205anti-parallel
Strand 4
A
105 109anti-parallel
Strand 5
A
130 134anti-parallel
Strand 6
A
140 141anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
65 68anti-parallel
Strand 3
A
211 220anti-parallel
Strand 4
A
88 94anti-parallel
Strand 5
A
166 172anti-parallel
Strand 6
A
177 182anti-parallel
Strand 7
A
185 191anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 53first strand
Strand 2
C
75 80anti-parallel
Strand 3
C
116 117anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 53first strand
Strand 2
C
75 80anti-parallel
Strand 3
C
200 205anti-parallel
Strand 4
C
105 109anti-parallel
Strand 5
C
130 134anti-parallel
Strand 6
C
140 141anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 60first strand
Strand 2
C
65 68anti-parallel
Strand 3
C
211 220anti-parallel
Strand 4
C
88 94anti-parallel
Strand 5
C
166 172anti-parallel
Strand 6
C
177 182anti-parallel
Strand 7
C
185 191anti-parallel
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