Analysis of interatomic Contacts of Structural Units in PDB entry:
6JWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JWP entry

There are 7 chains in PDB entry 6JWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 8	PHE 309
B	ALA 10	TRP 325
C	ARG 43	PHE 184
D	ASP 8	ALA 74
E	VAL 2	GLY 162
F	ASN 4	PHE 309
G	THR 6	ILE 225

There are 64 helices in PDB entry 6JWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	27	Right-handed alpha
Helix 2	AA2	A	33	38	Right-handed 310
Helix 3	AA3	A	65	73	Right-handed alpha
Helix 4	AA4	A	76	81	Right-handed alpha
Helix 5	AA5	A	97	115	Right-handed alpha
Helix 6	AA6	A	132	135	Right-handed 310
Helix 7	AA7	A	136	152	Right-handed alpha
Helix 8	AA8	A	169	180	Right-handed alpha
Helix 9	AA9	A	181	184	Right-handed 310
Helix 10	AB1	A	185	201	Right-handed alpha
Helix 11	AB2	A	241	258	Right-handed alpha
Helix 12	AB3	A	259	261	Right-handed 310
Helix 13	AB4	A	294	307	Right-handed alpha
Helix 14	AB5	B	21	32	Right-handed alpha
Helix 15	AB6	B	35	40	Right-handed alpha
Helix 16	AB7	B	75	81	Right-handed alpha
Helix 17	AB8	B	96	114	Right-handed alpha
Helix 18	AB9	B	130	151	Right-handed alpha
Helix 19	AC1	B	169	181	Right-handed alpha
Helix 20	AC2	B	185	195	Right-handed alpha
Helix 21	AC3	B	195	200	Right-handed alpha
Helix 22	AC4	B	224	245	Right-handed alpha
Helix 23	AC5	B	302	323	Right-handed alpha
Helix 24	AC6	C	44	71	Right-handed alpha
Helix 25	AC7	C	73	80	Right-handed alpha
Helix 26	AC8	C	87	94	Right-handed alpha
Helix 27	AC9	C	146	150	Right-handed 310
Helix 28	AD1	C	153	171	Right-handed alpha
Helix 29	AD2	D	28	30	Right-handed 310
Helix 30	AD3	D	31	33	Right-handed 310
Helix 31	AD4	D	34	39	Right-handed alpha
Helix 32	AD5	E	5	16	Right-handed alpha
Helix 33	AD6	E	65	85	Right-handed alpha
Helix 34	AD7	E	138	151	Right-handed alpha
Helix 35	AD8	E	152	157	Right-handed 310
Helix 36	AD9	F	18	28	Right-handed alpha
Helix 37	AE1	F	33	38	Right-handed 310
Helix 38	AE2	F	65	73	Right-handed alpha
Helix 39	AE3	F	97	115	Right-handed alpha
Helix 40	AE4	F	132	153	Right-handed alpha
Helix 41	AE5	F	169	181	Right-handed alpha
Helix 42	AE6	F	182	184	Right-handed 310
Helix 43	AE7	F	185	201	Right-handed alpha
Helix 44	AE8	F	241	255	Right-handed alpha
Helix 45	AE9	F	256	261	Right-handed 310
Helix 46	AF1	F	294	306	Right-handed alpha
Helix 47	AF2	F	307	309	Right-handed 310
Helix 48	AF3	G	21	28	Right-handed alpha
Helix 49	AF4	G	95	99	Right-handed 310
Helix 50	AF5	G	173	183	Right-handed alpha
Helix 51	AF6	G	185	200	Right-handed alpha
Helix 52	AF7	G	224	246	Right-handed alpha
Helix 53	AF8	G	248	252	Right-handed 310
Helix 54	AF9	G	302	326	Right-handed alpha
Helix 55	AG1	H	45	69	Right-handed alpha
Helix 56	AG2	H	73	80	Right-handed alpha
Helix 57	AG3	H	87	94	Right-handed alpha
Helix 58	AG4	H	153	173	Right-handed alpha
Helix 59	AG5	I	27	31	Right-handed alpha
Helix 60	AG6	I	33	39	Right-handed alpha
Helix 61	AG7	J	5	16	Right-handed alpha
Helix 62	AG8	J	65	86	Right-handed alpha
Helix 63	AG9	J	138	151	Right-handed alpha
Helix 64	AH1	J	152	154	Right-handed 310

There are 13 sheets in PDB entry 6JWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	51	first strand
Strand 2	A	55	61	anti-parallel
Strand 3	A	9	12	parallel
Strand 4	A	87	92	parallel
Strand 5	A	121	126	parallel
Strand 6	A	160	164	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	218	first strand
Strand 2	A	202	208	anti-parallel
Strand 3	A	283	288	anti-parallel
Strand 4	A	273	276	anti-parallel
Strand 5	A	264	269	anti-parallel
Strand 6	B	270	275	anti-parallel
Strand 7	B	280	285	anti-parallel
Strand 8	B	290	296	anti-parallel
Strand 9	B	202	209	anti-parallel
Strand 10	B	215	217	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	52	first strand
Strand 2	B	58	62	anti-parallel
Strand 3	B	12	16	parallel
Strand 4	B	85	91	parallel
Strand 5	B	118	124	parallel
Strand 6	B	161	164	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	E	103	112	anti-parallel
Strand 3	E	115	121	anti-parallel
Strand 4	E	127	133	anti-parallel
Strand 5	E	34	39	anti-parallel
Strand 6	E	45	50	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	E	103	112	anti-parallel
Strand 3	E	95	100	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	144	first strand
Strand 2	D	48	52	anti-parallel
Strand 3	D	56	63	anti-parallel
Strand 4	D	66	73	anti-parallel
Strand 5	D	11	15	anti-parallel
Strand 6	D	21	26	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	182	first strand
Strand 2	E	3	4	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	47	first strand
Strand 2	F	55	62	anti-parallel
Strand 3	F	50	51	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	47	first strand
Strand 2	F	55	62	anti-parallel
Strand 3	F	5	13	parallel
Strand 4	F	86	91	parallel
Strand 5	F	120	126	parallel
Strand 6	F	160	164	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	208	first strand
Strand 2	F	283	288	anti-parallel
Strand 3	F	273	276	anti-parallel
Strand 4	F	264	269	anti-parallel
Strand 5	G	270	275	anti-parallel
Strand 6	G	280	285	anti-parallel
Strand 7	G	290	296	anti-parallel
Strand 8	G	202	209	anti-parallel
Strand 9	G	215	218	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	143	first strand
Strand 2	I	48	52	anti-parallel
Strand 3	I	57	63	anti-parallel
Strand 4	I	66	72	anti-parallel
Strand 5	I	11	16	anti-parallel
Strand 6	I	23	26	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	181	182	first strand
Strand 2	J	3	4	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	50	first strand
Strand 2	J	34	39	anti-parallel
Strand 3	J	127	134	anti-parallel
Strand 4	J	115	121	anti-parallel
Strand 5	J	103	112	anti-parallel
Strand 6	J	95	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JWP