Analysis of interatomic Contacts of Structural Units in PDB entry:
6JWQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JWQ entry

There are 2 chains in PDB entry 6JWQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5ASP 708
B
 GLU 6GLU 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6JWQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 45Right-handed alpha
Helix 2
AA2
A
82 89Right-handed alpha
Helix 3
AA3
A
107 116Right-handed alpha
Helix 4
AA4
A
128 150Right-handed alpha
Helix 5
AA5
A
176 192Right-handed alpha
Helix 6
AA6
A
227 239Right-handed alpha
Helix 7
AA7
A
301 313Right-handed alpha
Helix 8
AA8
A
326 337Right-handed alpha
Helix 9
AA9
A
348 365Right-handed alpha
Helix 10
AB1
A
367 372Right-handed 310
Helix 11
AB2
A
411 424Right-handed alpha
Helix 12
AB3
A
447 466Right-handed alpha
Helix 13
AB4
A
485 495Right-handed alpha
Helix 14
AB5
A
510 518Right-handed 310
Helix 15
AB6
A
537 541Right-handed 310
Helix 16
AB7
A
546 565Right-handed alpha
Helix 17
AB8
A
568 570Right-handed 310
Helix 18
AB9
A
583 593Right-handed alpha
Helix 19
AC1
A
594 598Right-handed 310
Helix 20
AC2
A
609 614Right-handed alpha
Helix 21
AC3
A
659 680Right-handed alpha
Helix 22
AC4
A
689 705Right-handed alpha
Helix 23
AC5
B
6 10Right-handed 310
Helix 24
AC6
B
29 45Right-handed alpha
Helix 25
AC7
B
82 89Right-handed alpha
Helix 26
AC8
B
107 116Right-handed alpha
Helix 27
AC9
B
128 148Right-handed alpha
Helix 28
AD1
B
176 192Right-handed alpha
Helix 29
AD2
B
227 237Right-handed alpha
Helix 30
AD3
B
303 313Right-handed alpha
Helix 31
AD4
B
326 337Right-handed alpha
Helix 32
AD5
B
348 365Right-handed alpha
Helix 33
AD6
B
397 403Right-handed alpha
Helix 34
AD7
B
410 425Right-handed alpha
Helix 35
AD8
B
447 467Right-handed alpha
Helix 36
AD9
B
485 495Right-handed alpha
Helix 37
AE1
B
510 518Right-handed 310
Helix 38
AE2
B
537 541Right-handed 310
Helix 39
AE3
B
546 565Right-handed alpha
Helix 40
AE4
B
568 570Right-handed 310
Helix 41
AE5
B
583 593Right-handed alpha
Helix 42
AE6
B
594 598Right-handed 310
Helix 43
AE7
B
609 616Right-handed alpha
Helix 44
AE8
B
656 681Right-handed alpha
Helix 45
AE9
B
689 705Right-handed alpha
Helix 46
AF1
B
710 722Right-handed alpha
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There are 8 sheets in PDB entry 6JWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
163 172anti-parallel
Strand 3
A
16 24anti-parallel
Strand 4
A
208 214anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
163 172anti-parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
373 376anti-parallel
Strand 5
A
383 384anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 221first strand
Strand 2
A
316 318anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 575first strand
Strand 2
A
525 529parallel
Strand 3
A
500 503parallel
Strand 4
A
478 482parallel
Strand 5
A
428 432parallel
Strand 6
A
390 396parallel
Strand 7
A
684 687parallel
Strand 8
A
603 604parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
163 172anti-parallel
Strand 3
B
16 24anti-parallel
Strand 4
B
208 214anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
163 172anti-parallel
Strand 3
B
54 57anti-parallel
Strand 4
B
373 377anti-parallel
Strand 5
B
382 384anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 221first strand
Strand 2
B
316 318anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
572 575first strand
Strand 2
B
525 529parallel
Strand 3
B
500 503parallel
Strand 4
B
478 482parallel
Strand 5
B
428 432parallel
Strand 6
B
390 396parallel
Strand 7
B
684 687parallel
Strand 8
B
603 604parallel
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