Analysis of interatomic Contacts of Structural Units in PDB entry:
6JWS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JWS entry

There are 2 chains in PDB entry 6JWS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 5	ASP 708
B	GLN 5	GLU 722

There are 47 helices in PDB entry 6JWS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	45	Right-handed alpha
Helix 2	AA2	A	83	91	Right-handed alpha
Helix 3	AA3	A	107	115	Right-handed alpha
Helix 4	AA4	A	128	145	Right-handed alpha
Helix 5	AA5	A	176	191	Right-handed alpha
Helix 6	AA6	A	227	239	Right-handed alpha
Helix 7	AA7	A	305	313	Right-handed alpha
Helix 8	AA8	A	326	337	Right-handed alpha
Helix 9	AA9	A	348	365	Right-handed alpha
Helix 10	AB1	A	367	371	Right-handed 310
Helix 11	AB2	A	410	425	Right-handed alpha
Helix 12	AB3	A	447	466	Right-handed alpha
Helix 13	AB4	A	469	473	Right-handed 310
Helix 14	AB5	A	485	495	Right-handed alpha
Helix 15	AB6	A	510	516	Right-handed 310
Helix 16	AB7	A	537	541	Right-handed 310
Helix 17	AB8	A	546	565	Right-handed alpha
Helix 18	AB9	A	568	570	Right-handed 310
Helix 19	AC1	A	583	593	Right-handed alpha
Helix 20	AC2	A	594	598	Right-handed 310
Helix 21	AC3	A	609	614	Right-handed alpha
Helix 22	AC4	A	658	681	Right-handed alpha
Helix 23	AC5	A	689	705	Right-handed alpha
Helix 24	AC6	B	6	10	Right-handed 310
Helix 25	AC7	B	29	45	Right-handed alpha
Helix 26	AC8	B	84	91	Right-handed alpha
Helix 27	AC9	B	107	115	Right-handed alpha
Helix 28	AD1	B	128	149	Right-handed alpha
Helix 29	AD2	B	176	191	Right-handed alpha
Helix 30	AD3	B	227	237	Right-handed alpha
Helix 31	AD4	B	303	310	Right-handed alpha
Helix 32	AD5	B	326	337	Right-handed alpha
Helix 33	AD6	B	348	365	Right-handed alpha
Helix 34	AD7	B	397	403	Right-handed alpha
Helix 35	AD8	B	410	425	Right-handed alpha
Helix 36	AD9	B	447	465	Right-handed alpha
Helix 37	AE1	B	485	495	Right-handed alpha
Helix 38	AE2	B	510	518	Right-handed 310
Helix 39	AE3	B	537	541	Right-handed 310
Helix 40	AE4	B	546	565	Right-handed alpha
Helix 41	AE5	B	568	570	Right-handed 310
Helix 42	AE6	B	583	593	Right-handed alpha
Helix 43	AE7	B	594	598	Right-handed 310
Helix 44	AE8	B	609	614	Right-handed alpha
Helix 45	AE9	B	656	681	Right-handed alpha
Helix 46	AF1	B	689	705	Right-handed alpha
Helix 47	AF2	B	710	721	Right-handed alpha

There are 9 sheets in PDB entry 6JWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	51	first strand
Strand 2	A	163	172	anti-parallel
Strand 3	A	16	24	anti-parallel
Strand 4	A	208	214	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	51	first strand
Strand 2	A	163	172	anti-parallel
Strand 3	A	54	57	anti-parallel
Strand 4	A	373	376	anti-parallel
Strand 5	A	383	384	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	316	318	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	575	first strand
Strand 2	A	525	529	parallel
Strand 3	A	500	503	parallel
Strand 4	A	478	482	parallel
Strand 5	A	428	432	parallel
Strand 6	A	390	396	parallel
Strand 7	A	684	687	parallel
Strand 8	A	603	604	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	522	523	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	163	172	anti-parallel
Strand 3	B	16	24	anti-parallel
Strand 4	B	208	214	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	163	172	anti-parallel
Strand 3	B	54	57	anti-parallel
Strand 4	B	372	377	anti-parallel
Strand 5	B	382	384	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	316	318	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	575	first strand
Strand 2	B	525	529	parallel
Strand 3	B	500	503	parallel
Strand 4	B	478	482	parallel
Strand 5	B	428	432	parallel
Strand 6	B	390	396	parallel
Strand 7	B	684	687	parallel
Strand 8	B	603	604	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JWS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JWS