Analysis of interatomic Contacts of Structural Units in PDB entry:
6JX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JX5 entry

There are 3 chains in PDB entry 6JX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLU 437SER 814
A
 GLU 437SER 814
B
 GLU 437SER 814
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 6JX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
438 454Right-handed alpha
Helix 2
AA2
C
470 479Right-handed alpha
Helix 3
AA3
C
484 489Right-handed 310
Helix 4
AA4
C
503 520Right-handed alpha
Helix 5
AA5
C
549 568Right-handed alpha
Helix 6
AA6
C
569 573Right-handed 310
Helix 7
AA7
C
581 590Right-handed alpha
Helix 8
AA8
C
596 602Right-handed alpha
Helix 9
AA9
C
602 616Right-handed alpha
Helix 10
AB1
C
645 649Right-handed 310
Helix 11
AB2
C
655 669Right-handed alpha
Helix 12
AB3
C
672 687Right-handed alpha
Helix 13
AB4
C
688 693Right-handed alpha
Helix 14
AB5
C
696 706Right-handed alpha
Helix 15
AB6
C
711 719Right-handed alpha
Helix 16
AB7
C
725 731Right-handed alpha
Helix 17
AB8
C
731 743Right-handed alpha
Helix 18
AB9
C
744 757Right-handed alpha
Helix 19
AC1
C
764 769Right-handed 310
Helix 20
AC2
C
789 792Right-handed 310
Helix 21
AC3
C
801 813Right-handed alpha
Helix 22
AC4
A
438 454Right-handed alpha
Helix 23
AC5
A
467 469Right-handed 310
Helix 24
AC6
A
470 479Right-handed alpha
Helix 25
AC7
A
484 489Right-handed 310
Helix 26
AC8
A
503 520Right-handed alpha
Helix 27
AC9
A
549 568Right-handed alpha
Helix 28
AD1
A
569 573Right-handed 310
Helix 29
AD2
A
581 590Right-handed alpha
Helix 30
AD3
A
596 602Right-handed alpha
Helix 31
AD4
A
602 616Right-handed alpha
Helix 32
AD5
A
645 649Right-handed 310
Helix 33
AD6
A
655 669Right-handed alpha
Helix 34
AD7
A
672 687Right-handed alpha
Helix 35
AD8
A
688 695Right-handed 310
Helix 36
AD9
A
696 706Right-handed alpha
Helix 37
AE1
A
711 719Right-handed alpha
Helix 38
AE2
A
725 731Right-handed alpha
Helix 39
AE3
A
731 743Right-handed alpha
Helix 40
AE4
A
744 757Right-handed alpha
Helix 41
AE5
A
764 769Right-handed 310
Helix 42
AE6
A
789 791Right-handed 310
Helix 43
AE7
A
801 813Right-handed alpha
Helix 44
AE8
B
438 454Right-handed alpha
Helix 45
AE9
B
470 479Right-handed alpha
Helix 46
AF1
B
484 489Right-handed 310
Helix 47
AF2
B
503 520Right-handed alpha
Helix 48
AF3
B
549 568Right-handed alpha
Helix 49
AF4
B
569 573Right-handed 310
Helix 50
AF5
B
581 590Right-handed alpha
Helix 51
AF6
B
596 602Right-handed alpha
Helix 52
AF7
B
602 616Right-handed alpha
Helix 53
AF8
B
645 649Right-handed 310
Helix 54
AF9
B
655 669Right-handed alpha
Helix 55
AG1
B
672 687Right-handed alpha
Helix 56
AG2
B
688 693Right-handed alpha
Helix 57
AG3
B
696 706Right-handed alpha
Helix 58
AG4
B
711 719Right-handed alpha
Helix 59
AG5
B
725 731Right-handed alpha
Helix 60
AG6
B
731 743Right-handed alpha
Helix 61
AG7
B
744 757Right-handed alpha
Helix 62
AG8
B
764 769Right-handed 310
Helix 63
AG9
B
789 791Right-handed 310
Helix 64
AH1
B
801 813Right-handed alpha
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There are 12 sheets in PDB entry 6JX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
461 466first strand
Strand 2
C
490 495parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
526 528first strand
Strand 2
C
537 539anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
626 630first strand
Strand 2
C
636 641anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
720 722first strand
Strand 2
C
774 781parallel
Strand 3
C
794 798parallel
Strand 4
C
786 787anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 466first strand
Strand 2
A
490 495parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 528first strand
Strand 2
A
537 539anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 630first strand
Strand 2
A
636 641anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 722first strand
Strand 2
A
774 781parallel
Strand 3
A
793 798parallel
Strand 4
A
786 788anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 466first strand
Strand 2
B
490 495parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
526 528first strand
Strand 2
B
537 539anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
626 630first strand
Strand 2
B
636 641anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
720 722first strand
Strand 2
B
774 781parallel
Strand 3
B
793 798parallel
Strand 4
B
786 788anti-parallel
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