Analysis of interatomic Contacts of Structural Units in PDB entry:
6JYG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JYG entry

There are 6 chains in PDB entry 6JYG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 25	LEU 334
B	SER 25	LEU 334
C	SER 25	LEU 334
D	SER 25	LEU 334
E	SER 25	ALA 332
F	SER 25	LEU 334

There are 78 helices in PDB entry 6JYG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	49	Right-handed alpha
Helix 2	AA2	A	77	89	Right-handed alpha
Helix 3	AA3	A	100	107	Right-handed alpha
Helix 4	AA4	A	107	130	Right-handed alpha
Helix 5	AA5	A	140	142	Right-handed 310
Helix 6	AA6	A	161	182	Right-handed alpha
Helix 7	AA7	A	206	219	Right-handed alpha
Helix 8	AA8	A	236	249	Right-handed alpha
Helix 9	AA9	A	250	254	Right-handed 310
Helix 10	AB1	A	267	279	Right-handed alpha
Helix 11	AB2	A	290	296	Right-handed alpha
Helix 12	AB3	A	304	312	Right-handed alpha
Helix 13	AB4	A	318	333	Right-handed alpha
Helix 14	AB5	B	34	49	Right-handed alpha
Helix 15	AB6	B	77	89	Right-handed alpha
Helix 16	AB7	B	100	107	Right-handed alpha
Helix 17	AB8	B	107	130	Right-handed alpha
Helix 18	AB9	B	140	142	Right-handed 310
Helix 19	AC1	B	161	182	Right-handed alpha
Helix 20	AC2	B	206	219	Right-handed alpha
Helix 21	AC3	B	236	249	Right-handed alpha
Helix 22	AC4	B	250	254	Right-handed 310
Helix 23	AC5	B	267	279	Right-handed alpha
Helix 24	AC6	B	289	296	Right-handed alpha
Helix 25	AC7	B	304	312	Right-handed alpha
Helix 26	AC8	B	318	334	Right-handed alpha
Helix 27	AC9	C	36	49	Right-handed alpha
Helix 28	AD1	C	77	88	Right-handed alpha
Helix 29	AD2	C	100	107	Right-handed alpha
Helix 30	AD3	C	107	129	Right-handed alpha
Helix 31	AD4	C	140	142	Right-handed 310
Helix 32	AD5	C	161	182	Right-handed alpha
Helix 33	AD6	C	206	219	Right-handed alpha
Helix 34	AD7	C	236	249	Right-handed alpha
Helix 35	AD8	C	250	254	Right-handed 310
Helix 36	AD9	C	267	276	Right-handed alpha
Helix 37	AE1	C	290	296	Right-handed alpha
Helix 38	AE2	C	304	312	Right-handed alpha
Helix 39	AE3	C	318	333	Right-handed alpha
Helix 40	AE4	D	36	49	Right-handed alpha
Helix 41	AE5	D	77	88	Right-handed alpha
Helix 42	AE6	D	100	107	Right-handed alpha
Helix 43	AE7	D	107	130	Right-handed alpha
Helix 44	AE8	D	140	142	Right-handed 310
Helix 45	AE9	D	161	182	Right-handed alpha
Helix 46	AF1	D	206	219	Right-handed alpha
Helix 47	AF2	D	236	249	Right-handed alpha
Helix 48	AF3	D	250	254	Right-handed 310
Helix 49	AF4	D	267	279	Right-handed alpha
Helix 50	AF5	D	289	296	Right-handed alpha
Helix 51	AF6	D	304	312	Right-handed alpha
Helix 52	AF7	D	318	333	Right-handed alpha
Helix 53	AF8	E	36	49	Right-handed alpha
Helix 54	AF9	E	77	89	Right-handed alpha
Helix 55	AG1	E	100	107	Right-handed alpha
Helix 56	AG2	E	107	130	Right-handed alpha
Helix 57	AG3	E	140	142	Right-handed 310
Helix 58	AG4	E	161	182	Right-handed alpha
Helix 59	AG5	E	206	219	Right-handed alpha
Helix 60	AG6	E	236	249	Right-handed alpha
Helix 61	AG7	E	250	254	Right-handed 310
Helix 62	AG8	E	267	277	Right-handed alpha
Helix 63	AG9	E	289	296	Right-handed alpha
Helix 64	AH1	E	304	311	Right-handed alpha
Helix 65	AH2	E	318	332	Right-handed alpha
Helix 66	AH3	F	36	49	Right-handed alpha
Helix 67	AH4	F	77	89	Right-handed alpha
Helix 68	AH5	F	100	107	Right-handed alpha
Helix 69	AH6	F	107	130	Right-handed alpha
Helix 70	AH7	F	140	142	Right-handed 310
Helix 71	AH8	F	161	182	Right-handed alpha
Helix 72	AH9	F	206	219	Right-handed alpha
Helix 73	AI1	F	236	249	Right-handed alpha
Helix 74	AI2	F	250	254	Right-handed 310
Helix 75	AI3	F	267	279	Right-handed alpha
Helix 76	AI4	F	290	296	Right-handed alpha
Helix 77	AI5	F	304	312	Right-handed alpha
Helix 78	AI6	F	318	333	Right-handed alpha

There are 24 sheets in PDB entry 6JYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	53	57	parallel
Strand 3	A	26	30	parallel
Strand 4	A	90	95	parallel
Strand 5	A	132	134	parallel
Strand 6	A	185	190	parallel
Strand 7	A	137	138	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	53	57	parallel
Strand 3	A	26	30	parallel
Strand 4	A	90	95	parallel
Strand 5	A	132	134	parallel
Strand 6	A	185	190	parallel
Strand 7	A	258	260	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	231	235	parallel
Strand 3	A	264	266	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	283	286	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	53	57	parallel
Strand 3	B	26	30	parallel
Strand 4	B	90	95	parallel
Strand 5	B	132	134	parallel
Strand 6	B	185	190	parallel
Strand 7	B	137	138	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	53	57	parallel
Strand 3	B	26	30	parallel
Strand 4	B	90	95	parallel
Strand 5	B	132	134	parallel
Strand 6	B	185	190	parallel
Strand 7	B	258	260	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	231	235	parallel
Strand 3	B	264	266	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	283	286	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	53	57	parallel
Strand 3	C	26	30	parallel
Strand 4	C	90	95	parallel
Strand 5	C	132	134	parallel
Strand 6	C	185	190	parallel
Strand 7	C	137	138	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	53	57	parallel
Strand 3	C	26	30	parallel
Strand 4	C	90	95	parallel
Strand 5	C	132	134	parallel
Strand 6	C	185	190	parallel
Strand 7	C	258	260	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	194	first strand
Strand 2	C	231	235	parallel
Strand 3	C	264	266	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	283	286	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	53	57	parallel
Strand 3	D	26	30	parallel
Strand 4	D	90	95	parallel
Strand 5	D	132	134	parallel
Strand 6	D	185	190	parallel
Strand 7	D	137	138	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	53	57	parallel
Strand 3	D	26	30	parallel
Strand 4	D	90	95	parallel
Strand 5	D	132	134	parallel
Strand 6	D	185	190	parallel
Strand 7	D	258	260	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	194	first strand
Strand 2	D	231	235	parallel
Strand 3	D	264	266	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	223	first strand
Strand 2	D	283	286	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	72	first strand
Strand 2	E	53	57	parallel
Strand 3	E	27	30	parallel
Strand 4	E	92	95	parallel
Strand 5	E	132	134	parallel
Strand 6	E	185	190	parallel
Strand 7	E	137	138	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	72	first strand
Strand 2	E	53	57	parallel
Strand 3	E	27	30	parallel
Strand 4	E	92	95	parallel
Strand 5	E	132	134	parallel
Strand 6	E	185	190	parallel
Strand 7	E	258	260	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	194	first strand
Strand 2	E	231	235	parallel
Strand 3	E	264	266	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	223	first strand
Strand 2	E	283	286	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	72	first strand
Strand 2	F	53	57	parallel
Strand 3	F	26	30	parallel
Strand 4	F	90	95	parallel
Strand 5	F	132	134	parallel
Strand 6	F	185	190	parallel
Strand 7	F	137	138	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	72	first strand
Strand 2	F	53	57	parallel
Strand 3	F	26	30	parallel
Strand 4	F	90	95	parallel
Strand 5	F	132	134	parallel
Strand 6	F	185	190	parallel
Strand 7	F	258	260	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	194	first strand
Strand 2	F	231	235	parallel
Strand 3	F	264	266	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	223	first strand
Strand 2	F	283	286	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JYG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JYG