Analysis of interatomic Contacts of Structural Units in PDB entry:
6JYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JYJ entry

There are 3 chains in PDB entry 6JYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12ASN 346
B
 SER 9GLN 345
C
 ALA 12HIS 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6JYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 32Right-handed alpha
Helix 2
AA2
A
48 63Right-handed alpha
Helix 3
AA3
A
73 82Right-handed alpha
Helix 4
AA4
A
104 120Right-handed alpha
Helix 5
AA5
A
131 139Right-handed alpha
Helix 6
AA6
A
180 183Right-handed 310
Helix 7
AA7
A
189 197Right-handed alpha
Helix 8
AA8
A
219 230Right-handed alpha
Helix 9
AA9
A
236 240Right-handed 310
Helix 10
AB1
A
241 242Right-handed 310
Helix 11
AB2
A
243 254Right-handed alpha
Helix 12
AB3
A
260 279Right-handed alpha
Helix 13
AB4
A
281 296Right-handed alpha
Helix 14
AB5
A
302 319Right-handed alpha
Helix 15
AB6
A
323 343Right-handed alpha
Helix 16
AB7
B
19 32Right-handed alpha
Helix 17
AB8
B
48 63Right-handed alpha
Helix 18
AB9
B
73 82Right-handed alpha
Helix 19
AC1
B
104 120Right-handed alpha
Helix 20
AC2
B
131 139Right-handed alpha
Helix 21
AC3
B
180 183Right-handed 310
Helix 22
AC4
B
189 195Right-handed alpha
Helix 23
AC5
B
219 230Right-handed alpha
Helix 24
AC6
B
236 240Right-handed 310
Helix 25
AC7
B
241 242Right-handed 310
Helix 26
AC8
B
243 254Right-handed alpha
Helix 27
AC9
B
260 279Right-handed alpha
Helix 28
AD1
B
281 297Right-handed alpha
Helix 29
AD2
B
302 319Right-handed alpha
Helix 30
AD3
B
323 343Right-handed alpha
Helix 31
AD4
C
19 32Right-handed alpha
Helix 32
AD5
C
48 63Right-handed alpha
Helix 33
AD6
C
74 82Right-handed alpha
Helix 34
AD7
C
104 120Right-handed alpha
Helix 35
AD8
C
131 139Right-handed alpha
Helix 36
AD9
C
180 183Right-handed 310
Helix 37
AE1
C
189 194Right-handed alpha
Helix 38
AE2
C
219 230Right-handed alpha
Helix 39
AE3
C
242 254Right-handed alpha
Helix 40
AE4
C
260 279Right-handed alpha
Helix 41
AE5
C
281 296Right-handed alpha
Helix 42
AE6
C
302 319Right-handed alpha
Helix 43
AE7
C
323 343Right-handed alpha
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There are 9 sheets in PDB entry 6JYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
185 188anti-parallel
Strand 4
A
67 72anti-parallel
Strand 5
A
92 98anti-parallel
Strand 6
A
165 173parallel
Strand 7
A
152 159anti-parallel
Strand 8
A
140 147anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
45 47anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
257 258parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
212 215anti-parallel
Strand 3
B
185 188anti-parallel
Strand 4
B
67 72anti-parallel
Strand 5
B
92 98anti-parallel
Strand 6
B
165 173parallel
Strand 7
B
152 159anti-parallel
Strand 8
B
140 147anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
45 47anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
257 258parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
212 215anti-parallel
Strand 3
C
185 188anti-parallel
Strand 4
C
67 73anti-parallel
Strand 5
C
92 98anti-parallel
Strand 6
C
165 173parallel
Strand 7
C
152 159anti-parallel
Strand 8
C
140 147anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 36first strand
Strand 2
C
45 47anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 232first strand
Strand 2
C
257 258parallel
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