Analysis of interatomic Contacts of Structural Units in PDB entry:
6JYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JYM entry

There is 1 chain in PDB entry 6JYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASP 706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6JYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 32Right-handed 310
Helix 2
AA2
A
35 55Right-handed alpha
Helix 3
AA3
A
58 71Right-handed alpha
Helix 4
AA4
A
114 119Right-handed 310
Helix 5
AA5
A
217 221Right-handed 310
Helix 6
AA6
A
321 325Right-handed 310
Helix 7
AA7
A
430 432Right-handed 310
Helix 8
AA8
A
484 494Right-handed alpha
Helix 9
AA9
A
510 516Right-handed alpha
Helix 10
AB1
A
517 520Right-handed 310
Helix 11
AB2
A
521 539Right-handed alpha
Helix 12
AB3
A
543 545Right-handed 310
Helix 13
AB4
A
553 566Right-handed alpha
Helix 14
AB5
A
567 570Right-handed 310
Helix 15
AB6
A
584 588Right-handed 310
Helix 16
AB7
A
590 593Right-handed 310
Helix 17
AB8
A
594 599Right-handed alpha
Helix 18
AB9
A
603 614Right-handed alpha
Helix 19
AC1
A
615 618Right-handed 310
Helix 20
AC2
A
642 656Right-handed alpha
Helix 21
AC3
A
681 700Right-handed alpha
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There are 9 sheets in PDB entry 6JYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
21 25anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
84 90anti-parallel
Strand 3
A
79 81anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
84 90anti-parallel
Strand 3
A
98 102anti-parallel
Strand 4
A
110 113anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 131first strand
Strand 2
A
137 144anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
162 177anti-parallel
Strand 5
A
183 188anti-parallel
Strand 6
A
208 213anti-parallel
Strand 7
A
222 225anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 239first strand
Strand 2
A
245 251anti-parallel
Strand 3
A
259 264anti-parallel
Strand 4
A
279 282anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 295first strand
Strand 2
A
298 303anti-parallel
Strand 3
A
311 316anti-parallel
Strand 4
A
326 329anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 343first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
358 364anti-parallel
Strand 4
A
370 374anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 385first strand
Strand 2
A
392 399anti-parallel
Strand 3
A
402 410anti-parallel
Strand 4
A
419 424anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 442first strand
Strand 2
A
448 456anti-parallel
Strand 3
A
497 501anti-parallel
Strand 4
A
467 470parallel
Strand 5
A
547 552parallel
Strand 6
A
572 576parallel
Strand 7
A
628 634parallel
Strand 8
A
666 671parallel
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