Analysis of interatomic Contacts of Structural Units in PDB entry:
6JYN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JYN entry

There are 4 chains in PDB entry 6JYN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	MET 311
B	THR 3	MET 311
C	THR 3	MET 311
D	THR 3	MET 311

There are 20 helices in PDB entry 6JYN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	58	62	Right-handed 310
Helix 3	AA3	A	121	125	Right-handed 310
Helix 4	AA4	A	143	146	Right-handed 310
Helix 5	AA5	A	235	246	Right-handed alpha
Helix 6	AA6	B	12	16	Right-handed 310
Helix 7	AA7	B	58	62	Right-handed 310
Helix 8	AA8	B	121	125	Right-handed 310
Helix 9	AA9	B	143	146	Right-handed 310
Helix 10	AB1	B	235	246	Right-handed alpha
Helix 11	AB2	C	12	16	Right-handed 310
Helix 12	AB3	C	58	62	Right-handed 310
Helix 13	AB4	C	121	125	Right-handed 310
Helix 14	AB5	C	143	146	Right-handed 310
Helix 15	AB6	C	235	246	Right-handed alpha
Helix 16	AB7	D	12	16	Right-handed 310
Helix 17	AB8	D	58	62	Right-handed 310
Helix 18	AB9	D	121	125	Right-handed 310
Helix 19	AC1	D	143	146	Right-handed 310
Helix 20	AC2	D	235	246	Right-handed alpha

There are 12 sheets in PDB entry 6JYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	232	first strand
Strand 2	A	208	217	anti-parallel
Strand 3	A	27	31	anti-parallel
Strand 4	A	286	287	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	232	first strand
Strand 2	A	208	217	anti-parallel
Strand 3	A	277	281	anti-parallel
Strand 4	A	266	273	anti-parallel
Strand 5	A	253	259	anti-parallel
Strand 6	A	295	302	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	71	first strand
Strand 2	A	80	84	anti-parallel
Strand 3	A	148	155	anti-parallel
Strand 4	A	131	136	anti-parallel
Strand 5	A	110	116	anti-parallel
Strand 6	A	163	172	anti-parallel
Strand 7	A	65	71	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	232	first strand
Strand 2	B	208	217	anti-parallel
Strand 3	B	27	31	anti-parallel
Strand 4	B	286	287	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	232	first strand
Strand 2	B	208	217	anti-parallel
Strand 3	B	277	281	anti-parallel
Strand 4	B	266	273	anti-parallel
Strand 5	B	253	259	anti-parallel
Strand 6	B	295	302	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	71	first strand
Strand 2	B	80	84	anti-parallel
Strand 3	B	148	153	anti-parallel
Strand 4	B	131	136	anti-parallel
Strand 5	B	110	116	anti-parallel
Strand 6	B	163	172	anti-parallel
Strand 7	B	65	71	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	232	first strand
Strand 2	C	208	217	anti-parallel
Strand 3	C	27	31	anti-parallel
Strand 4	C	286	287	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	232	first strand
Strand 2	C	208	217	anti-parallel
Strand 3	C	277	281	anti-parallel
Strand 4	C	266	273	anti-parallel
Strand 5	C	253	259	anti-parallel
Strand 6	C	295	302	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	71	first strand
Strand 2	C	80	84	anti-parallel
Strand 3	C	148	153	anti-parallel
Strand 4	C	131	136	anti-parallel
Strand 5	C	110	116	anti-parallel
Strand 6	C	163	172	anti-parallel
Strand 7	C	65	71	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	232	first strand
Strand 2	D	208	216	anti-parallel
Strand 3	D	27	31	anti-parallel
Strand 4	D	286	287	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	232	first strand
Strand 2	D	208	216	anti-parallel
Strand 3	D	277	281	anti-parallel
Strand 4	D	265	273	anti-parallel
Strand 5	D	253	260	anti-parallel
Strand 6	D	295	302	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	71	first strand
Strand 2	D	80	84	anti-parallel
Strand 3	D	148	153	anti-parallel
Strand 4	D	131	136	anti-parallel
Strand 5	D	110	116	anti-parallel
Strand 6	D	163	172	anti-parallel
Strand 7	D	65	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JYN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JYN