Analysis of interatomic Contacts of Structural Units in PDB entry:
6JYS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JYS entry

There are 4 chains in PDB entry 6JYS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	MET 310
B	THR 3	MET 310
C	THR 3	MET 310
D	THR 3	MET 310

There are 17 helices in PDB entry 6JYS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	58	62	Right-handed 310
Helix 3	AA3	A	120	124	Right-handed 310
Helix 4	AA4	A	234	245	Right-handed alpha
Helix 5	AA5	B	12	16	Right-handed 310
Helix 6	AA6	B	58	62	Right-handed 310
Helix 7	AA7	B	120	124	Right-handed 310
Helix 8	AA8	B	142	145	Right-handed 310
Helix 9	AA9	B	234	245	Right-handed alpha
Helix 10	AB1	C	12	16	Right-handed 310
Helix 11	AB2	C	58	62	Right-handed 310
Helix 12	AB3	C	120	124	Right-handed 310
Helix 13	AB4	C	234	245	Right-handed alpha
Helix 14	AB5	D	12	16	Right-handed 310
Helix 15	AB6	D	58	62	Right-handed 310
Helix 16	AB7	D	120	124	Right-handed 310
Helix 17	AB8	D	234	245	Right-handed alpha

There are 12 sheets in PDB entry 6JYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	207	215	anti-parallel
Strand 3	A	27	31	anti-parallel
Strand 4	A	285	286	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	207	215	anti-parallel
Strand 3	A	276	280	anti-parallel
Strand 4	A	265	272	anti-parallel
Strand 5	A	252	258	anti-parallel
Strand 6	A	294	301	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	71	first strand
Strand 2	A	79	83	anti-parallel
Strand 3	A	147	154	anti-parallel
Strand 4	A	130	135	anti-parallel
Strand 5	A	109	115	anti-parallel
Strand 6	A	162	171	anti-parallel
Strand 7	A	65	71	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	207	215	anti-parallel
Strand 3	B	27	31	anti-parallel
Strand 4	B	285	286	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	207	215	anti-parallel
Strand 3	B	276	280	anti-parallel
Strand 4	B	265	272	anti-parallel
Strand 5	B	252	258	anti-parallel
Strand 6	B	294	301	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	71	first strand
Strand 2	B	79	83	anti-parallel
Strand 3	B	147	154	anti-parallel
Strand 4	B	130	135	anti-parallel
Strand 5	B	109	115	anti-parallel
Strand 6	B	162	171	anti-parallel
Strand 7	B	65	71	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	231	first strand
Strand 2	C	207	215	anti-parallel
Strand 3	C	27	31	anti-parallel
Strand 4	C	285	286	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	231	first strand
Strand 2	C	207	215	anti-parallel
Strand 3	C	276	280	anti-parallel
Strand 4	C	265	272	anti-parallel
Strand 5	C	252	258	anti-parallel
Strand 6	C	294	301	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	71	first strand
Strand 2	C	79	83	anti-parallel
Strand 3	C	147	154	anti-parallel
Strand 4	C	130	135	anti-parallel
Strand 5	C	109	115	anti-parallel
Strand 6	C	162	171	anti-parallel
Strand 7	C	65	71	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	231	first strand
Strand 2	D	207	216	anti-parallel
Strand 3	D	27	31	anti-parallel
Strand 4	D	285	286	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	231	first strand
Strand 2	D	207	216	anti-parallel
Strand 3	D	276	280	anti-parallel
Strand 4	D	265	272	anti-parallel
Strand 5	D	252	258	anti-parallel
Strand 6	D	294	301	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	71	first strand
Strand 2	D	79	83	anti-parallel
Strand 3	D	147	154	anti-parallel
Strand 4	D	130	135	anti-parallel
Strand 5	D	109	115	anti-parallel
Strand 6	D	162	171	anti-parallel
Strand 7	D	65	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JYS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JYS