Analysis of interatomic Contacts of Structural Units in PDB entry:
6JYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JYV entry

There are 2 chains in PDB entry 6JYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5LEU 333
B
 LEU 6LEU 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6JYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
18 36Right-handed alpha
Helix 3
AA3
A
47 63Right-handed alpha
Helix 4
AA4
A
65 70Right-handed alpha
Helix 5
AA5
A
71 81Right-handed 310
Helix 6
AA6
A
112 118Right-handed alpha
Helix 7
AA7
A
132 159Right-handed alpha
Helix 8
AA8
A
164 170Right-handed alpha
Helix 9
AA9
A
241 248Right-handed alpha
Helix 10
AB1
A
295 306Right-handed alpha
Helix 11
AB2
A
306 312Right-handed alpha
Helix 12
AB3
A
313 323Right-handed alpha
Helix 13
AB4
B
12 16Right-handed 310
Helix 14
AB5
B
18 36Right-handed alpha
Helix 15
AB6
B
47 64Right-handed alpha
Helix 16
AB7
B
65 70Right-handed alpha
Helix 17
AB8
B
71 81Right-handed 310
Helix 18
AB9
B
112 118Right-handed alpha
Helix 19
AC1
B
132 159Right-handed alpha
Helix 20
AC2
B
164 170Right-handed alpha
Helix 21
AC3
B
241 248Right-handed alpha
Helix 22
AC4
B
295 306Right-handed alpha
Helix 23
AC5
B
306 312Right-handed alpha
Helix 24
AC6
B
313 323Right-handed alpha
Helix 25
AC7
B
326 331Right-handed 310
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There are 4 sheets in PDB entry 6JYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
38 42parallel
Strand 3
A
236 240anti-parallel
Strand 4
A
207 212anti-parallel
Strand 5
A
268 276anti-parallel
Strand 6
A
175 183anti-parallel
Strand 7
A
100 105anti-parallel
Strand 8
A
83 85anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
257 259anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
38 42parallel
Strand 3
B
236 240anti-parallel
Strand 4
B
207 212anti-parallel
Strand 5
B
268 276anti-parallel
Strand 6
B
175 183anti-parallel
Strand 7
B
100 105anti-parallel
Strand 8
B
83 85anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 228first strand
Strand 2
B
218 222anti-parallel
Strand 3
B
257 259anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il