Analysis of interatomic Contacts of Structural Units in PDB entry:
6JYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JYZ entry

There is 1 chain in PDB entry 6JYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 34LEU 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6JYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 88Right-handed alpha
Helix 2
AA2
A
99 104Right-handed alpha
Helix 3
AA3
A
111 128Right-handed alpha
Helix 4
AA4
A
167 171Right-handed 310
Helix 5
AA5
A
188 200Right-handed alpha
Helix 6
AA6
A
201 203Right-handed 310
Helix 7
AA7
A
204 219Right-handed alpha
Helix 8
AA8
A
241 264Right-handed alpha
Helix 9
AA9
A
279 284Right-handed alpha
Helix 10
AB1
A
290 295Right-handed 310
Helix 11
AB2
A
318 334Right-handed alpha
Helix 12
AB3
A
347 366Right-handed alpha
Helix 13
AB4
A
380 387Right-handed alpha
Helix 14
AB5
A
410 418Right-handed alpha
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There are 5 sheets in PDB entry 6JYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
43 46anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
421 426anti-parallel
Strand 3
A
435 449anti-parallel
Strand 4
A
472 487anti-parallel
Strand 5
A
456 459anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 432first strand
Strand 2
A
435 449anti-parallel
Strand 3
A
472 487anti-parallel
Strand 4
A
462 469anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
271 274parallel
Strand 3
A
226 230parallel
Strand 4
A
131 136parallel
Strand 5
A
93 98parallel
Strand 6
A
55 59parallel
Strand 7
A
368 371parallel
Strand 8
A
338 342parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 399first strand
Strand 2
A
406 409anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il