Analysis of interatomic Contacts of Structural Units in PDB entry:
6JZK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JZK entry

There are 2 chains in PDB entry 6JZK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 30	GLN 379
B	GLU 30	GLY 378

There are 8 helices in PDB entry 6JZK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	53	Right-handed 310
Helix 2	AA2	A	109	115	Right-handed alpha
Helix 3	AA3	A	121	126	Right-handed alpha
Helix 4	AA4	A	291	301	Right-handed alpha
Helix 5	AA5	A	327	329	Right-handed 310
Helix 6	AA6	B	109	115	Right-handed alpha
Helix 7	AA7	B	122	127	Right-handed 310
Helix 8	AA8	B	291	301	Right-handed alpha

There are 17 sheets in PDB entry 6JZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	88	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	144	148	parallel
Strand 4	A	157	160	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	77	first strand
Strand 2	A	59	66	anti-parallel
Strand 3	A	90	98	anti-parallel
Strand 4	A	137	141	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	77	first strand
Strand 2	A	59	66	anti-parallel
Strand 3	A	90	98	anti-parallel
Strand 4	A	132	133	anti-parallel
Strand 5	A	167	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	205	207	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	260	first strand
Strand 2	A	171	180	anti-parallel
Strand 3	A	339	347	parallel
Strand 4	A	365	373	anti-parallel
Strand 5	A	323	325	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	A	190	200	anti-parallel
Strand 3	A	276	285	anti-parallel
Strand 4	A	309	315	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	219	222	anti-parallel
Strand 3	A	236	239	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	264	first strand
Strand 2	A	334	335	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	88	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	144	148	parallel
Strand 4	B	157	160	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	77	first strand
Strand 2	B	59	66	anti-parallel
Strand 3	B	90	98	anti-parallel
Strand 4	B	137	141	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	77	first strand
Strand 2	B	59	66	anti-parallel
Strand 3	B	90	98	anti-parallel
Strand 4	B	132	133	anti-parallel
Strand 5	B	167	168	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	205	207	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	260	first strand
Strand 2	B	171	180	anti-parallel
Strand 3	B	339	347	parallel
Strand 4	B	365	373	anti-parallel
Strand 5	B	323	325	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	246	first strand
Strand 2	B	190	200	anti-parallel
Strand 3	B	276	285	anti-parallel
Strand 4	B	288	289	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	246	first strand
Strand 2	B	190	200	anti-parallel
Strand 3	B	276	285	anti-parallel
Strand 4	B	309	315	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	220	222	anti-parallel
Strand 3	B	237	239	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	334	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JZK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JZK