Analysis of interatomic Contacts of Structural Units in PDB entry:
6JZQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JZQ entry

There are 5 chains in PDB entry 6JZQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 344
B	MET 1	TYR 345
C	MET 1	LEU 344
D	MET 1	TYR 345
E	MET 1	TYR 345

There are 84 helices in PDB entry 6JZQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	17	Right-handed alpha
Helix 2	AA2	A	18	22	Right-handed 310
Helix 3	AA3	A	30	37	Right-handed alpha
Helix 4	AA4	A	65	71	Right-handed alpha
Helix 5	AA5	A	73	91	Right-handed alpha
Helix 6	AA6	A	100	109	Right-handed alpha
Helix 7	AA7	A	123	125	Right-handed 310
Helix 8	AA8	A	130	149	Right-handed alpha
Helix 9	AA9	A	165	178	Right-handed alpha
Helix 10	AB1	A	190	202	Right-handed alpha
Helix 11	AB2	A	208	213	Right-handed alpha
Helix 12	AB3	A	214	216	Right-handed 310
Helix 13	AB4	A	232	236	Right-handed 310
Helix 14	AB5	A	250	255	Right-handed alpha
Helix 15	AB6	A	280	284	Right-handed 310
Helix 16	AB7	A	286	288	Right-handed 310
Helix 17	AB8	A	293	305	Right-handed alpha
Helix 18	AB9	A	318	333	Right-handed alpha
Helix 19	AC1	B	10	19	Right-handed alpha
Helix 20	AC2	B	20	22	Right-handed 310
Helix 21	AC3	B	30	37	Right-handed alpha
Helix 22	AC4	B	65	71	Right-handed alpha
Helix 23	AC5	B	73	91	Right-handed alpha
Helix 24	AC6	B	101	109	Right-handed alpha
Helix 25	AC7	B	110	114	Right-handed 310
Helix 26	AC8	B	123	125	Right-handed 310
Helix 27	AC9	B	130	150	Right-handed alpha
Helix 28	AD1	B	165	178	Right-handed alpha
Helix 29	AD2	B	190	202	Right-handed alpha
Helix 30	AD3	B	208	213	Right-handed alpha
Helix 31	AD4	B	214	216	Right-handed 310
Helix 32	AD5	B	250	255	Right-handed alpha
Helix 33	AD6	B	280	285	Right-handed alpha
Helix 34	AD7	B	293	305	Right-handed alpha
Helix 35	AD8	B	318	332	Right-handed alpha
Helix 36	AD9	C	10	16	Right-handed alpha
Helix 37	AE1	C	17	22	Right-handed 310
Helix 38	AE2	C	30	37	Right-handed alpha
Helix 39	AE3	C	65	71	Right-handed alpha
Helix 40	AE4	C	73	91	Right-handed alpha
Helix 41	AE5	C	100	109	Right-handed alpha
Helix 42	AE6	C	110	114	Right-handed 310
Helix 43	AE7	C	123	125	Right-handed 310
Helix 44	AE8	C	130	149	Right-handed alpha
Helix 45	AE9	C	165	178	Right-handed alpha
Helix 46	AF1	C	190	202	Right-handed alpha
Helix 47	AF2	C	208	213	Right-handed alpha
Helix 48	AF3	C	214	216	Right-handed 310
Helix 49	AF4	C	250	254	Right-handed 310
Helix 50	AF5	C	293	305	Right-handed alpha
Helix 51	AF6	C	318	332	Right-handed alpha
Helix 52	AF7	D	10	18	Right-handed alpha
Helix 53	AF8	D	25	29	Right-handed 310
Helix 54	AF9	D	30	37	Right-handed alpha
Helix 55	AG1	D	66	71	Right-handed alpha
Helix 56	AG2	D	73	90	Right-handed alpha
Helix 57	AG3	D	101	106	Right-handed alpha
Helix 58	AG4	D	123	125	Right-handed 310
Helix 59	AG5	D	130	149	Right-handed alpha
Helix 60	AG6	D	152	155	Right-handed 310
Helix 61	AG7	D	165	178	Right-handed alpha
Helix 62	AG8	D	190	202	Right-handed alpha
Helix 63	AG9	D	208	213	Right-handed alpha
Helix 64	AH1	D	214	216	Right-handed 310
Helix 65	AH2	D	232	236	Right-handed 310
Helix 66	AH3	D	293	305	Right-handed alpha
Helix 67	AH4	D	318	332	Right-handed alpha
Helix 68	AH5	D	340	345	Right-handed 310
Helix 69	AH6	E	10	20	Right-handed alpha
Helix 70	AH7	E	30	37	Right-handed alpha
Helix 71	AH8	E	65	71	Right-handed alpha
Helix 72	AH9	E	73	91	Right-handed alpha
Helix 73	AI1	E	100	109	Right-handed alpha
Helix 74	AI2	E	123	125	Right-handed 310
Helix 75	AI3	E	130	150	Right-handed alpha
Helix 76	AI4	E	152	155	Right-handed 310
Helix 77	AI5	E	165	177	Right-handed alpha
Helix 78	AI6	E	190	202	Right-handed alpha
Helix 79	AI7	E	208	213	Right-handed alpha
Helix 80	AI8	E	214	216	Right-handed 310
Helix 81	AI9	E	232	236	Right-handed 310
Helix 82	AJ1	E	250	255	Right-handed alpha
Helix 83	AJ2	E	293	305	Right-handed alpha
Helix 84	AJ3	E	318	333	Right-handed alpha

There are 16 sheets in PDB entry 6JZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	48	first strand
Strand 2	A	54	61	anti-parallel
Strand 3	A	2	6	parallel
Strand 4	A	95	98	parallel
Strand 5	A	127	128	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	183	187	parallel
Strand 3	A	157	161	parallel
Strand 4	A	218	221	parallel
Strand 5	A	240	244	parallel
Strand 6	A	260	264	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	267	270	anti-parallel
Strand 3	A	334	336	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	48	first strand
Strand 2	B	54	61	anti-parallel
Strand 3	B	2	6	parallel
Strand 4	B	95	98	parallel
Strand 5	B	127	128	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	183	187	parallel
Strand 3	B	157	161	parallel
Strand 4	B	218	221	parallel
Strand 5	B	240	244	parallel
Strand 6	B	260	264	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	267	270	anti-parallel
Strand 3	B	334	336	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	48	first strand
Strand 2	C	54	61	anti-parallel
Strand 3	C	2	6	parallel
Strand 4	C	95	98	parallel
Strand 5	C	127	128	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	120	121	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	206	first strand
Strand 2	C	183	187	parallel
Strand 3	C	157	161	parallel
Strand 4	C	218	221	parallel
Strand 5	C	241	244	parallel
Strand 6	C	261	264	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	292	first strand
Strand 2	C	267	269	anti-parallel
Strand 3	C	335	336	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	48	first strand
Strand 2	D	54	61	anti-parallel
Strand 3	D	2	6	parallel
Strand 4	D	95	98	parallel
Strand 5	D	127	128	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	206	first strand
Strand 2	D	183	187	parallel
Strand 3	D	157	161	parallel
Strand 4	D	218	221	parallel
Strand 5	D	240	243	parallel
Strand 6	D	260	263	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	292	first strand
Strand 2	D	267	270	anti-parallel
Strand 3	D	334	336	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	48	first strand
Strand 2	E	54	61	anti-parallel
Strand 3	E	2	6	parallel
Strand 4	E	95	98	parallel
Strand 5	E	127	128	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	206	first strand
Strand 2	E	183	187	parallel
Strand 3	E	157	161	parallel
Strand 4	E	218	221	parallel
Strand 5	E	240	244	parallel
Strand 6	E	260	264	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	292	first strand
Strand 2	E	267	270	anti-parallel
Strand 3	E	334	336	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JZQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JZQ