Analysis of interatomic Contacts of Structural Units in PDB entry:
6JZZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JZZ entry

There are 2 chains in PDB entry 6JZZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 341
B
 GLU 9ALA 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 6JZZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
25 29Right-handed 310
Helix 3
AA3
A
30 37Right-handed alpha
Helix 4
AA4
A
66 71Right-handed alpha
Helix 5
AA5
A
73 91Right-handed alpha
Helix 6
AA6
A
100 109Right-handed alpha
Helix 7
AA7
A
123 125Right-handed 310
Helix 8
AA8
A
130 149Right-handed alpha
Helix 9
AA9
A
152 155Right-handed 310
Helix 10
AB1
A
165 178Right-handed alpha
Helix 11
AB2
A
191 202Right-handed alpha
Helix 12
AB3
A
208 213Right-handed alpha
Helix 13
AB4
A
214 216Right-handed 310
Helix 14
AB5
A
232 236Right-handed 310
Helix 15
AB6
A
277 282Right-handed alpha
Helix 16
AB7
A
293 305Right-handed alpha
Helix 17
AB8
A
318 332Right-handed alpha
Helix 18
AB9
B
16 46Right-handed alpha
Helix 19
AC1
B
49 74Right-handed alpha
Helix 20
AC2
B
79 87Right-handed alpha
Helix 21
AC3
B
87 100Right-handed alpha
Helix 22
AC4
B
102 112Right-handed alpha
Helix 23
AC5
B
112 129Right-handed alpha
Helix 24
AC6
B
130 158Right-handed alpha
Helix 25
AC7
B
158 191Right-handed alpha
Helix 26
AC8
B
194 214Right-handed alpha
Helix 27
AC9
B
216 225Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6JZZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 48first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
2 6parallel
Strand 4
A
95 98parallel
Strand 5
A
127 128parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
120 121anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
183 187parallel
Strand 3
A
157 161parallel
Strand 4
A
218 221parallel
Strand 5
A
240 244parallel
Strand 6
A
260 263parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
267 269anti-parallel
Strand 3
A
335 336anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il