Analysis of interatomic Contacts of Structural Units in PDB entry:
6K09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K09 entry

There are 3 chains in PDB entry 6K09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 6ASP 296
B
 PHE 6SER 294
D
 ARG 30VAL 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6K09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
15 22Right-handed alpha
Helix 3
AA3
A
23 58Right-handed alpha
Helix 4
AA4
A
58 74Right-handed alpha
Helix 5
AA5
A
80 85Right-handed alpha
Helix 6
AA6
A
95 102Right-handed alpha
Helix 7
AA7
A
115 124Right-handed alpha
Helix 8
AA8
A
124 131Right-handed alpha
Helix 9
AA9
A
132 134Right-handed 310
Helix 10
AB1
A
135 140Right-handed alpha
Helix 11
AB2
A
187 191Right-handed 310
Helix 12
AB3
A
239 245Right-handed 310
Helix 13
AB4
A
261 279Right-handed alpha
Helix 14
AB5
A
283 289Right-handed alpha
Helix 15
AB6
B
9 13Right-handed 310
Helix 16
AB7
B
15 22Right-handed alpha
Helix 17
AB8
B
23 58Right-handed alpha
Helix 18
AB9
B
58 74Right-handed alpha
Helix 19
AC1
B
80 85Right-handed alpha
Helix 20
AC2
B
95 102Right-handed alpha
Helix 21
AC3
B
115 124Right-handed alpha
Helix 22
AC4
B
124 131Right-handed alpha
Helix 23
AC5
B
132 134Right-handed 310
Helix 24
AC6
B
135 140Right-handed alpha
Helix 25
AC7
B
187 191Right-handed 310
Helix 26
AC8
B
239 245Right-handed 310
Helix 27
AC9
B
249 253Right-handed 310
Helix 28
AD1
B
261 279Right-handed alpha
Helix 29
AD2
B
283 289Right-handed alpha
Helix 30
AD3
D
34 46Right-handed alpha
Helix 31
AD4
D
52 78Right-handed alpha
Helix 32
AD5
D
81 83Right-handed 310
Helix 33
AD6
D
87 99Right-handed alpha
Helix 34
AD7
D
100 120Right-handed alpha
Helix 35
AD8
D
131 136Right-handed alpha
Helix 36
AD9
D
141 152Right-handed alpha
Helix 37
AE1
D
160 188Right-handed alpha
Helix 38
AE2
D
194 204Right-handed alpha
Helix 39
AE3
D
205 212Right-handed alpha
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There are 6 sheets in PDB entry 6K09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 150first strand
Strand 2
A
155 162anti-parallel
Strand 3
A
172 180anti-parallel
Strand 4
A
195 200anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
233 236anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 150first strand
Strand 2
B
155 162anti-parallel
Strand 3
B
172 180anti-parallel
Strand 4
B
195 200anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
235 236anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 51first strand
Strand 2
D
192 193parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 86first strand
Strand 2
D
157 158parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il