Analysis of interatomic Contacts of Structural Units in PDB entry:
6K0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K0C entry

There are 3 chains in PDB entry 6K0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 29THR 212
A
 PHE 6ASP 296
B
 PHE 6GLN 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 6K0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
34 46Right-handed alpha
Helix 2
AA2
D
52 79Right-handed alpha
Helix 3
AA3
D
87 99Right-handed alpha
Helix 4
AA4
D
101 120Right-handed alpha
Helix 5
AA5
D
127 132Right-handed alpha
Helix 6
AA6
D
137 149Right-handed alpha
Helix 7
AA7
D
156 185Right-handed alpha
Helix 8
AA8
D
191 201Right-handed alpha
Helix 9
AA9
D
202 212Right-handed alpha
Helix 10
AB1
A
15 22Right-handed alpha
Helix 11
AB2
A
23 74Right-handed alpha
Helix 12
AB3
A
80 85Right-handed alpha
Helix 13
AB4
A
95 103Right-handed alpha
Helix 14
AB5
A
115 124Right-handed alpha
Helix 15
AB6
A
124 129Right-handed alpha
Helix 16
AB7
A
130 131Right-handed 310
Helix 17
AB8
A
132 134Right-handed 310
Helix 18
AB9
A
135 140Right-handed alpha
Helix 19
AC1
A
187 191Right-handed 310
Helix 20
AC2
A
239 245Right-handed 310
Helix 21
AC3
A
249 253Right-handed 310
Helix 22
AC4
A
259 279Right-handed alpha
Helix 23
AC5
A
283 289Right-handed alpha
Helix 24
AC6
B
9 13Right-handed 310
Helix 25
AC7
B
15 22Right-handed alpha
Helix 26
AC8
B
23 58Right-handed alpha
Helix 27
AC9
B
58 74Right-handed alpha
Helix 28
AD1
B
80 85Right-handed alpha
Helix 29
AD2
B
93 103Right-handed alpha
Helix 30
AD3
B
115 124Right-handed alpha
Helix 31
AD4
B
124 129Right-handed alpha
Helix 32
AD5
B
130 131Right-handed 310
Helix 33
AD6
B
132 134Right-handed 310
Helix 34
AD7
B
135 140Right-handed alpha
Helix 35
AD8
B
187 191Right-handed 310
Helix 36
AD9
B
239 245Right-handed 310
Helix 37
AE1
B
249 253Right-handed 310
Helix 38
AE2
B
259 279Right-handed alpha
Helix 39
AE3
B
280 282Right-handed 310
Helix 40
AE4
B
283 289Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6K0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 51first strand
Strand 2
D
189 190parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 150first strand
Strand 2
A
155 162anti-parallel
Strand 3
A
172 180anti-parallel
Strand 4
A
195 200anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
233 236anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 150first strand
Strand 2
B
155 162anti-parallel
Strand 3
B
172 180anti-parallel
Strand 4
B
195 200anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
235 236anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il