Analysis of interatomic Contacts of Structural Units in PDB entry:
6K0S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K0S entry

There is 1 chain in PDB entry 6K0S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 726TRP 1287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6K0S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
763 767Right-handed 310
Helix 2
AA2
A
830 834Right-handed 310
Helix 3
AA3
A
909 919Right-handed alpha
Helix 4
AA4
A
975 978Right-handed 310
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There are 9 sheets in PDB entry 6K0S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 737first strand
Strand 2
A
879 887anti-parallel
Strand 3
A
769 771anti-parallel
Strand 4
A
748 749anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 737first strand
Strand 2
A
879 887anti-parallel
Strand 3
A
786 794anti-parallel
Strand 4
A
851 861anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
777 781first strand
Strand 2
A
866 870anti-parallel
Strand 3
A
800 807anti-parallel
Strand 4
A
810 818anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 826first strand
Strand 2
A
845 847anti-parallel
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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
901 903first strand
Strand 2
A
925 928parallel
Strand 3
A
947 950parallel
Strand 4
A
981 988parallel
Strand 5
A
1011 1018parallel
Strand 6
A
1033 1035parallel
Strand 7
A
1057 1059parallel
Strand 8
A
1088 1097parallel
Strand 9
A
1111 1121parallel
Strand 10
A
1146 1154parallel
Strand 11
A
1189 1199parallel
Strand 12
A
1219 1229parallel
Strand 13
A
1251 1261parallel
Strand 14
A
1277 1283parallel
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There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
931 934first strand
Strand 2
A
956 959parallel
Strand 3
A
981 988parallel
Strand 4
A
1011 1018parallel
Strand 5
A
1038 1040parallel
Strand 6
A
1062 1064parallel
Strand 7
A
1088 1097parallel
Strand 8
A
1111 1121parallel
Strand 9
A
1146 1154parallel
Strand 10
A
1189 1199parallel
Strand 11
A
1219 1229parallel
Strand 12
A
1251 1261parallel
Strand 13
A
1277 1283parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
938 941first strand
Strand 2
A
970 973parallel
Strand 3
A
1002 1003parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1024 1027first strand
Strand 2
A
1047 1050parallel
Strand 3
A
1071 1074parallel
Strand 4
A
1103 1106parallel
Strand 5
A
1127 1130parallel
Strand 6
A
1179 1183parallel
Strand 7
A
1204 1210parallel
Strand 8
A
1234 1238parallel
Strand 9
A
1266 1269parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1123 1124first strand
Strand 2
A
1157 1160anti-parallel
Strand 3
A
1174 1176anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il