Analysis of interatomic Contacts of Structural Units in PDB entry:
6K0W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6K0W entry

There are 3 chains in PDB entry 6K0W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 15	LEU 594
A	GLY 35	LEU 594
C	GLY 35	ILE 434

There are 72 helices in PDB entry 6K0W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	20	35	Right-handed alpha
Helix 2	AA2	B	42	52	Right-handed alpha
Helix 3	AA3	B	82	95	Right-handed alpha
Helix 4	AA4	B	116	120	Right-handed 310
Helix 5	AA5	B	121	128	Right-handed alpha
Helix 6	AA6	B	129	131	Right-handed 310
Helix 7	AA7	B	147	156	Right-handed alpha
Helix 8	AA8	B	159	177	Right-handed alpha
Helix 9	AA9	B	192	205	Right-handed alpha
Helix 10	AB1	B	352	359	Right-handed 310
Helix 11	AB2	B	360	371	Right-handed alpha
Helix 12	AB3	B	382	394	Right-handed alpha
Helix 13	AB4	B	410	424	Right-handed alpha
Helix 14	AB5	B	443	450	Right-handed alpha
Helix 15	AB6	B	458	478	Right-handed alpha
Helix 16	AB7	B	514	525	Right-handed alpha
Helix 17	AB8	B	557	563	Right-handed alpha
Helix 18	AB9	B	579	586	Right-handed alpha
Helix 19	AC1	A	42	51	Right-handed alpha
Helix 20	AC2	A	82	95	Right-handed alpha
Helix 21	AC3	A	116	120	Right-handed 310
Helix 22	AC4	A	121	126	Right-handed alpha
Helix 23	AC5	A	145	156	Right-handed alpha
Helix 24	AC6	A	159	177	Right-handed alpha
Helix 25	AC7	A	192	205	Right-handed alpha
Helix 26	AC8	A	241	245	Right-handed 310
Helix 27	AC9	A	310	317	Right-handed alpha
Helix 28	AD1	A	341	346	Right-handed alpha
Helix 29	AD2	A	352	359	Right-handed 310
Helix 30	AD3	A	360	371	Right-handed alpha
Helix 31	AD4	A	382	394	Right-handed alpha
Helix 32	AD5	A	410	424	Right-handed alpha
Helix 33	AD6	A	443	451	Right-handed alpha
Helix 34	AD7	A	458	478	Right-handed alpha
Helix 35	AD8	A	514	526	Right-handed alpha
Helix 36	AD9	A	556	564	Right-handed alpha
Helix 37	AE1	A	580	586	Right-handed alpha
Helix 38	AE2	C	42	52	Right-handed alpha
Helix 39	AE3	C	82	95	Right-handed alpha
Helix 40	AE4	C	117	120	Right-handed 310
Helix 41	AE5	C	121	128	Right-handed alpha
Helix 42	AE6	C	129	131	Right-handed 310
Helix 43	AE7	C	147	155	Right-handed alpha
Helix 44	AE8	C	159	177	Right-handed alpha
Helix 45	AE9	C	192	205	Right-handed alpha
Helix 46	AF1	C	241	245	Right-handed 310
Helix 47	AF2	C	352	359	Right-handed 310
Helix 48	AF3	C	360	370	Right-handed alpha
Helix 49	AF4	C	382	394	Right-handed alpha
Helix 50	AF5	C	410	424	Right-handed alpha
Helix 51	AF6	C	443	451	Right-handed alpha
Helix 52	AF7	C	458	478	Right-handed alpha
Helix 53	AF8	C	514	526	Right-handed alpha
Helix 54	AF9	C	556	563	Right-handed alpha
Helix 55	AG1	C	587	589	Right-handed 310
Helix 56	AG2	D	19	35	Right-handed alpha
Helix 57	AG3	D	42	52	Right-handed alpha
Helix 58	AG4	D	82	95	Right-handed alpha
Helix 59	AG5	D	117	121	Right-handed 310
Helix 60	AG6	D	122	130	Right-handed alpha
Helix 61	AG7	D	147	152	Right-handed alpha
Helix 62	AG8	D	159	177	Right-handed alpha
Helix 63	AG9	D	192	205	Right-handed alpha
Helix 64	AH1	D	241	245	Right-handed 310
Helix 65	AH2	D	352	359	Right-handed 310
Helix 66	AH3	D	360	371	Right-handed alpha
Helix 67	AH4	D	382	394	Right-handed alpha
Helix 68	AH5	D	410	424	Right-handed alpha
Helix 69	AH6	D	443	451	Right-handed alpha
Helix 70	AH7	D	458	478	Right-handed alpha
Helix 71	AH8	D	514	526	Right-handed alpha
Helix 72	AH9	D	555	561	Right-handed alpha

There are 17 sheets in PDB entry 6K0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	A	577	578	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	D	37	39	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	64	first strand
Strand 2	B	487	494	anti-parallel
Strand 3	B	77	80	parallel
Strand 4	B	428	433	parallel
Strand 5	B	401	404	parallel
Strand 6	B	98	103	parallel
Strand 7	B	178	188	parallel
Strand 8	B	232	239	anti-parallel
Strand 9	B	209	216	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	D	349	350	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	303	304	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	D	228	229	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	538	first strand
Strand 2	B	542	545	anti-parallel
Strand 3	B	548	551	anti-parallel
Strand 4	B	570	573	parallel
Strand 5	B	591	594	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	C	37	39	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	64	first strand
Strand 2	A	487	493	anti-parallel
Strand 3	A	77	80	parallel
Strand 4	A	428	433	parallel
Strand 5	A	401	404	parallel
Strand 6	A	98	103	parallel
Strand 7	A	178	188	parallel
Strand 8	A	232	239	anti-parallel
Strand 9	A	209	216	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	C	349	350	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	303	304	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	322	first strand
Strand 2	A	333	335	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	C	228	229	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	545	first strand
Strand 2	A	548	551	anti-parallel
Strand 3	A	569	572	parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	64	first strand
Strand 2	C	487	493	anti-parallel
Strand 3	C	77	80	parallel
Strand 4	C	428	433	parallel
Strand 5	C	401	404	parallel
Strand 6	C	98	103	parallel
Strand 7	C	178	188	parallel
Strand 8	C	232	239	anti-parallel
Strand 9	C	209	216	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	538	first strand
Strand 2	C	542	545	anti-parallel
Strand 3	C	548	551	anti-parallel
Strand 4	C	569	573	parallel
Strand 5	C	591	594	parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	64	first strand
Strand 2	D	487	493	anti-parallel
Strand 3	D	77	80	parallel
Strand 4	D	428	433	parallel
Strand 5	D	401	404	parallel
Strand 6	D	98	103	parallel
Strand 7	D	178	188	parallel
Strand 8	D	232	239	anti-parallel
Strand 9	D	209	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6K0W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6K0W