Analysis of interatomic Contacts of Structural Units in PDB entry:
6K10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K10 entry

There is 1 chain in PDB entry 6K10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ASN 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6K10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
18 21Right-handed 310
Helix 3
AA3
A
22 40Right-handed alpha
Helix 4
AA4
A
40 53Right-handed alpha
Helix 5
AA5
A
55 63Right-handed alpha
Helix 6
AA6
A
63 83Right-handed alpha
Helix 7
AA7
A
90 94Right-handed 310
Helix 8
AA8
A
118 132Right-handed alpha
Helix 9
AA9
A
143 158Right-handed alpha
Helix 10
AB1
A
169 178Right-handed alpha
Helix 11
AB2
A
189 203Right-handed alpha
Helix 12
AB3
A
224 238Right-handed alpha
Helix 13
AB4
A
239 242Right-handed 310
Helix 14
AB5
A
256 273Right-handed alpha
Helix 15
AB6
A
275 279Right-handed 310
Helix 16
AB7
A
287 301Right-handed alpha
Helix 17
AB8
A
313 316Right-handed 310
Helix 18
AB9
A
330 334Right-handed 310
Helix 19
AC1
A
349 359Right-handed alpha
Helix 20
AC2
A
372 383Right-handed alpha
Helix 21
AC3
A
394 398Right-handed 310
Helix 22
AC4
A
407 409Right-handed 310
Helix 23
AC5
A
417 424Right-handed alpha
Helix 24
AC6
A
449 459Right-handed alpha
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There are 4 sheets in PDB entry 6K10. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
425 432anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
134 138parallel
Strand 3
A
107 111parallel
Strand 4
A
183 187parallel
Strand 5
A
207 210parallel
Strand 6
A
411 412anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
321 323anti-parallel
Strand 3
A
341 347parallel
Strand 4
A
249 253parallel
Strand 5
A
216 219parallel
Strand 6
A
365 369parallel
Strand 7
A
387 390parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
317 318anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il