Analysis of interatomic Contacts of Structural Units in PDB entry:
6K17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K17 entry

There are 2 chains in PDB entry 6K17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 77SER 294
B
 ALA 77PHE 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6K17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 99Right-handed alpha
Helix 2
AA2
A
137 142Right-handed alpha
Helix 3
AA3
A
149 158Right-handed alpha
Helix 4
AA4
A
167 180Right-handed alpha
Helix 5
AA5
A
189 203Right-handed alpha
Helix 6
AA6
A
206 216Right-handed alpha
Helix 7
AA7
A
236 258Right-handed alpha
Helix 8
AA8
A
276 285Right-handed alpha
Helix 9
AA9
B
84 99Right-handed alpha
Helix 10
AB1
B
137 143Right-handed alpha
Helix 11
AB2
B
149 158Right-handed alpha
Helix 12
AB3
B
167 180Right-handed alpha
Helix 13
AB4
B
189 203Right-handed alpha
Helix 14
AB5
B
206 216Right-handed alpha
Helix 15
AB6
B
236 258Right-handed alpha
Helix 16
AB7
B
276 285Right-handed alpha
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There are 4 sheets in PDB entry 6K17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
133 136parallel
Strand 3
A
123 127anti-parallel
Strand 4
A
104 110anti-parallel
Strand 5
A
162 165parallel
Strand 6
A
186 188parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
117 118anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
133 136parallel
Strand 3
B
123 127anti-parallel
Strand 4
B
104 110anti-parallel
Strand 5
B
162 165parallel
Strand 6
B
186 188parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
117 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il