Analysis of interatomic Contacts of Structural Units in PDB entry:
6K1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K1O entry

There are 4 chains in PDB entry 6K1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10LYS 390
B
 ALA 10LYS 390
C
 ARG 9LYS 390
D
 ARG 9LEU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 6K1O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
59 74Right-handed alpha
Helix 3
AA3
A
83 93Right-handed alpha
Helix 4
AA4
A
109 118Right-handed alpha
Helix 5
AA5
A
118 124Right-handed alpha
Helix 6
AA6
A
134 142Right-handed alpha
Helix 7
AA7
A
163 174Right-handed alpha
Helix 8
AA8
A
191 196Right-handed 310
Helix 9
AA9
A
224 239Right-handed alpha
Helix 10
AB1
A
243 255Right-handed alpha
Helix 11
AB2
A
256 277Right-handed alpha
Helix 12
AB3
A
294 302Right-handed alpha
Helix 13
AB4
A
315 327Right-handed alpha
Helix 14
AB5
A
355 363Right-handed alpha
Helix 15
AB6
A
377 389Right-handed alpha
Helix 16
AB7
B
12 20Right-handed alpha
Helix 17
AB8
B
59 74Right-handed alpha
Helix 18
AB9
B
83 93Right-handed alpha
Helix 19
AC1
B
107 117Right-handed alpha
Helix 20
AC2
B
117 124Right-handed alpha
Helix 21
AC3
B
134 142Right-handed alpha
Helix 22
AC4
B
163 174Right-handed alpha
Helix 23
AC5
B
191 196Right-handed 310
Helix 24
AC6
B
224 238Right-handed alpha
Helix 25
AC7
B
243 255Right-handed alpha
Helix 26
AC8
B
256 277Right-handed alpha
Helix 27
AC9
B
294 302Right-handed alpha
Helix 28
AD1
B
316 327Right-handed alpha
Helix 29
AD2
B
355 362Right-handed alpha
Helix 30
AD3
B
377 389Right-handed alpha
Helix 31
AD4
C
12 20Right-handed alpha
Helix 32
AD5
C
59 74Right-handed alpha
Helix 33
AD6
C
83 93Right-handed alpha
Helix 34
AD7
C
109 117Right-handed alpha
Helix 35
AD8
C
118 124Right-handed alpha
Helix 36
AD9
C
134 142Right-handed alpha
Helix 37
AE1
C
163 174Right-handed alpha
Helix 38
AE2
C
191 196Right-handed 310
Helix 39
AE3
C
224 239Right-handed alpha
Helix 40
AE4
C
243 255Right-handed alpha
Helix 41
AE5
C
256 277Right-handed alpha
Helix 42
AE6
C
294 302Right-handed alpha
Helix 43
AE7
C
315 327Right-handed alpha
Helix 44
AE8
C
355 362Right-handed alpha
Helix 45
AE9
C
377 389Right-handed alpha
Helix 46
AF1
D
12 20Right-handed alpha
Helix 47
AF2
D
59 74Right-handed alpha
Helix 48
AF3
D
83 93Right-handed alpha
Helix 49
AF4
D
110 117Right-handed alpha
Helix 50
AF5
D
118 123Right-handed alpha
Helix 51
AF6
D
134 142Right-handed alpha
Helix 52
AF7
D
163 174Right-handed alpha
Helix 53
AF8
D
191 196Right-handed 310
Helix 54
AF9
D
224 238Right-handed alpha
Helix 55
AG1
D
243 255Right-handed alpha
Helix 56
AG2
D
256 277Right-handed alpha
Helix 57
AG3
D
294 302Right-handed alpha
Helix 58
AG4
D
316 327Right-handed alpha
Helix 59
AG5
D
355 362Right-handed alpha
Helix 60
AG6
D
377 389Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6K1O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
217 221anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
177 181parallel
Strand 5
A
146 152parallel
Strand 6
A
100 104parallel
Strand 7
A
126 130parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 285first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
368 372anti-parallel
Strand 4
A
342 344anti-parallel
Strand 5
A
331 332parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
217 221anti-parallel
Strand 3
B
199 203anti-parallel
Strand 4
B
177 181parallel
Strand 5
B
146 152parallel
Strand 6
B
100 104parallel
Strand 7
B
126 130parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 285first strand
Strand 2
B
308 313anti-parallel
Strand 3
B
368 372anti-parallel
Strand 4
B
342 344anti-parallel
Strand 5
B
331 332parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 81first strand
Strand 2
C
217 221anti-parallel
Strand 3
C
199 203anti-parallel
Strand 4
C
177 181parallel
Strand 5
C
146 152parallel
Strand 6
C
100 104parallel
Strand 7
C
126 130parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
281 285first strand
Strand 2
C
308 313anti-parallel
Strand 3
C
368 372anti-parallel
Strand 4
C
342 344anti-parallel
Strand 5
C
331 332parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 81first strand
Strand 2
D
217 221anti-parallel
Strand 3
D
199 203anti-parallel
Strand 4
D
177 181parallel
Strand 5
D
146 152parallel
Strand 6
D
100 104parallel
Strand 7
D
126 130parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
281 285first strand
Strand 2
D
308 313anti-parallel
Strand 3
D
368 372anti-parallel
Strand 4
D
342 344anti-parallel
Strand 5
D
331 332parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il