Analysis of interatomic Contacts of Structural Units in PDB entry:
6K1P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6K1P entry

There are 11 chains in PDB entry 6K1P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ARG 134
B	GLY 14	GLY 101
C	ALA 12	LYS 118
D	THR 29	ALA 121
E	ARG 40	ARG 134
F	ARG 17	GLY 102
G	ALA 12	LYS 118
H	THR 29	ALA 121
I	T 2	T 147
J	A 1	A 146
K	GLN 184	SER 657

There are 56 helices in PDB entry 6K1P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	57	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	130	Right-handed alpha
Helix 5	AA5	B	16	20	Right-handed 310
Helix 6	AA6	B	24	29	Right-handed 310
Helix 7	AA7	B	30	42	Right-handed alpha
Helix 8	AA8	B	49	76	Right-handed alpha
Helix 9	AA9	B	82	94	Right-handed alpha
Helix 10	AB1	C	16	21	Right-handed alpha
Helix 11	AB2	C	27	36	Right-handed alpha
Helix 12	AB3	C	46	72	Right-handed alpha
Helix 13	AB4	C	79	90	Right-handed alpha
Helix 14	AB5	C	90	97	Right-handed alpha
Helix 15	AB6	D	34	46	Right-handed alpha
Helix 16	AB7	D	52	81	Right-handed alpha
Helix 17	AB8	D	87	99	Right-handed alpha
Helix 18	AB9	D	102	120	Right-handed alpha
Helix 19	AC1	E	45	57	Right-handed alpha
Helix 20	AC2	E	63	76	Right-handed alpha
Helix 21	AC3	E	85	114	Right-handed alpha
Helix 22	AC4	E	120	132	Right-handed alpha
Helix 23	AC5	F	24	29	Right-handed 310
Helix 24	AC6	F	30	41	Right-handed alpha
Helix 25	AC7	F	49	76	Right-handed alpha
Helix 26	AC8	F	82	94	Right-handed alpha
Helix 27	AC9	G	16	22	Right-handed alpha
Helix 28	AD1	G	26	36	Right-handed alpha
Helix 29	AD2	G	45	72	Right-handed alpha
Helix 30	AD3	G	79	89	Right-handed alpha
Helix 31	AD4	G	90	97	Right-handed alpha
Helix 32	AD5	G	112	116	Right-handed 310
Helix 33	AD6	H	34	46	Right-handed alpha
Helix 34	AD7	H	52	81	Right-handed alpha
Helix 35	AD8	H	87	99	Right-handed alpha
Helix 36	AD9	H	103	120	Right-handed alpha
Helix 37	AE1	K	199	211	Right-handed alpha
Helix 38	AE2	K	226	241	Right-handed alpha
Helix 39	AE3	K	256	268	Right-handed alpha
Helix 40	AE4	K	283	288	Right-handed alpha
Helix 41	AE5	K	334	340	Right-handed alpha
Helix 42	AE6	K	362	369	Right-handed alpha
Helix 43	AE7	K	378	383	Right-handed alpha
Helix 44	AE8	K	396	402	Right-handed alpha
Helix 45	AE9	K	405	409	Right-handed 310
Helix 46	AF1	K	413	418	Right-handed alpha
Helix 47	AF2	K	434	446	Right-handed alpha
Helix 48	AF3	K	467	476	Right-handed alpha
Helix 49	AF4	K	478	483	Right-handed 310
Helix 50	AF5	K	496	501	Right-handed alpha
Helix 51	AF6	K	503	518	Right-handed alpha
Helix 52	AF7	K	529	539	Right-handed alpha
Helix 53	AF8	K	554	565	Right-handed alpha
Helix 54	AF9	K	577	582	Right-handed alpha
Helix 55	AG1	K	601	610	Right-handed alpha
Helix 56	AG2	K	634	656	Right-handed alpha

There are 10 sheets in PDB entry 6K1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	300	302	first strand
Strand 2	K	249	252	parallel
Strand 3	K	321	323	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	425	431	first strand
Strand 2	K	622	628	parallel
Strand 3	K	592	595	parallel
Strand 4	K	521	524	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6K1P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6K1P