Analysis of interatomic Contacts of Structural Units in PDB entry:
6K28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K28 entry

There are 3 chains in PDB entry 6K28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9GLU 254
B
 PRO 9TYR 252
C
 PRO 7GLU 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6K28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
32 43Right-handed alpha
Helix 3
AA3
A
52 61Right-handed alpha
Helix 4
AA4
A
74 92Right-handed alpha
Helix 5
AA5
A
105 117Right-handed alpha
Helix 6
AA6
A
126 135Right-handed alpha
Helix 7
AA7
A
148 151Right-handed 310
Helix 8
AA8
A
152 164Right-handed alpha
Helix 9
AA9
A
189 195Right-handed 310
Helix 10
AB1
A
197 210Right-handed alpha
Helix 11
AB2
A
215 236Right-handed alpha
Helix 12
AB3
A
239 252Right-handed alpha
Helix 13
AB4
B
10 21Right-handed alpha
Helix 14
AB5
B
32 43Right-handed alpha
Helix 15
AB6
B
52 63Right-handed alpha
Helix 16
AB7
B
74 91Right-handed alpha
Helix 17
AB8
B
105 116Right-handed alpha
Helix 18
AB9
B
117 119Right-handed 310
Helix 19
AC1
B
126 135Right-handed alpha
Helix 20
AC2
B
149 164Right-handed alpha
Helix 21
AC3
B
189 195Right-handed 310
Helix 22
AC4
B
197 210Right-handed alpha
Helix 23
AC5
B
215 235Right-handed alpha
Helix 24
AC6
B
236 238Right-handed 310
Helix 25
AC7
B
239 252Right-handed alpha
Helix 26
AC8
C
8 21Right-handed alpha
Helix 27
AC9
C
32 43Right-handed alpha
Helix 28
AD1
C
52 63Right-handed alpha
Helix 29
AD2
C
74 91Right-handed alpha
Helix 30
AD3
C
105 117Right-handed alpha
Helix 31
AD4
C
127 135Right-handed alpha
Helix 32
AD5
C
149 151Right-handed 310
Helix 33
AD6
C
152 164Right-handed alpha
Helix 34
AD7
C
189 195Right-handed 310
Helix 35
AD8
C
197 210Right-handed alpha
Helix 36
AD9
C
215 235Right-handed alpha
Helix 37
AE1
C
239 253Right-handed alpha
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There are 3 sheets in PDB entry 6K28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
23 27parallel
Strand 3
A
65 69parallel
Strand 4
A
95 98parallel
Strand 5
A
122 125parallel
Strand 6
A
166 169parallel
Strand 7
A
174 177anti-parallel
Strand 8
A
182 185anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
23 27parallel
Strand 3
B
65 69parallel
Strand 4
B
95 98parallel
Strand 5
B
122 125parallel
Strand 6
B
166 169parallel
Strand 7
B
174 177anti-parallel
Strand 8
B
182 185anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
23 27parallel
Strand 3
C
65 69parallel
Strand 4
C
95 98parallel
Strand 5
C
122 126parallel
Strand 6
C
166 170parallel
Strand 7
C
173 177anti-parallel
Strand 8
C
182 186anti-parallel
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