Analysis of interatomic Contacts of Structural Units in PDB entry:
6K2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K2D entry

There are 2 chains in PDB entry 6K2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5ASP 479
B
 THR 22PHE 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6K2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 34Right-handed alpha
Helix 2
AA2
A
52 60Right-handed alpha
Helix 3
AA3
A
111 123Right-handed alpha
Helix 4
AA4
A
135 141Right-handed alpha
Helix 5
AA5
A
144 146Right-handed 310
Helix 6
AA6
A
147 152Right-handed alpha
Helix 7
AA7
A
170 175Right-handed alpha
Helix 8
AA8
A
199 206Right-handed alpha
Helix 9
AA9
A
213 229Right-handed alpha
Helix 10
AB1
A
262 277Right-handed alpha
Helix 11
AB2
A
290 305Right-handed alpha
Helix 12
AB3
A
313 324Right-handed alpha
Helix 13
AB4
A
324 342Right-handed alpha
Helix 14
AB5
A
350 371Right-handed alpha
Helix 15
AB6
A
375 378Right-handed 310
Helix 16
AB7
A
379 384Right-handed alpha
Helix 17
AB8
A
385 425Right-handed alpha
Helix 18
AB9
A
431 449Right-handed alpha
Helix 19
AC1
A
457 467Right-handed alpha
Helix 20
AC2
A
469 478Right-handed alpha
Helix 21
AC3
B
23 34Right-handed alpha
Helix 22
AC4
B
43 56Right-handed alpha
Helix 23
AC5
B
197 202Right-handed alpha
Helix 24
AC6
B
219 229Right-handed alpha
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There are 4 sheets in PDB entry 6K2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
11 17anti-parallel
Strand 3
A
77 80anti-parallel
Strand 4
A
97 99anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
92 95parallel
Strand 3
A
82 84anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
128 129parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
81 83parallel
Strand 3
B
101 103parallel
Strand 4
B
121 123parallel
Strand 5
B
141 143parallel
Strand 6
B
161 163parallel
Strand 7
B
185 187parallel
Strand 8
B
208 210parallel
Strand 9
B
237 239parallel
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