Analysis of interatomic Contacts of Structural Units in PDB entry:
6K35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6K35 entry

There are 2 chains in PDB entry 6K35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	LYS 642
B	GLY 3	LYS 642

There are 44 helices in PDB entry 6K35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	52	Right-handed 310
Helix 2	AA2	A	92	96	Right-handed 310
Helix 3	AA3	A	168	170	Right-handed 310
Helix 4	AA4	A	171	187	Right-handed alpha
Helix 5	AA5	A	226	241	Right-handed alpha
Helix 6	AA6	A	278	292	Right-handed alpha
Helix 7	AA7	A	315	320	Right-handed alpha
Helix 8	AA8	A	346	359	Right-handed alpha
Helix 9	AA9	A	374	381	Right-handed alpha
Helix 10	AB1	A	381	386	Right-handed alpha
Helix 11	AB2	A	409	427	Right-handed alpha
Helix 12	AB3	A	447	457	Right-handed alpha
Helix 13	AB4	A	462	480	Right-handed alpha
Helix 14	AB5	A	489	492	Right-handed 310
Helix 15	AB6	A	508	517	Right-handed alpha
Helix 16	AB7	A	525	530	Right-handed alpha
Helix 17	AB8	A	551	557	Right-handed alpha
Helix 18	AB9	A	570	572	Right-handed 310
Helix 19	AC1	A	588	597	Right-handed alpha
Helix 20	AC2	A	598	609	Right-handed alpha
Helix 21	AC3	A	610	614	Right-handed 310
Helix 22	AC4	A	615	633	Right-handed alpha
Helix 23	AC5	B	48	52	Right-handed 310
Helix 24	AC6	B	92	96	Right-handed 310
Helix 25	AC7	B	168	170	Right-handed 310
Helix 26	AC8	B	171	187	Right-handed alpha
Helix 27	AC9	B	226	241	Right-handed alpha
Helix 28	AD1	B	278	292	Right-handed alpha
Helix 29	AD2	B	315	320	Right-handed alpha
Helix 30	AD3	B	346	359	Right-handed alpha
Helix 31	AD4	B	374	381	Right-handed alpha
Helix 32	AD5	B	381	386	Right-handed alpha
Helix 33	AD6	B	409	427	Right-handed alpha
Helix 34	AD7	B	447	458	Right-handed alpha
Helix 35	AD8	B	462	480	Right-handed alpha
Helix 36	AD9	B	489	492	Right-handed 310
Helix 37	AE1	B	508	517	Right-handed alpha
Helix 38	AE2	B	525	530	Right-handed alpha
Helix 39	AE3	B	551	557	Right-handed alpha
Helix 40	AE4	B	568	572	Right-handed 310
Helix 41	AE5	B	588	597	Right-handed alpha
Helix 42	AE6	B	598	609	Right-handed alpha
Helix 43	AE7	B	610	614	Right-handed 310
Helix 44	AE8	B	615	634	Right-handed alpha

There are 13 sheets in PDB entry 6K35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	63	67	anti-parallel
Strand 3	A	34	42	anti-parallel
Strand 4	A	72	73	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	63	67	anti-parallel
Strand 3	A	34	42	anti-parallel
Strand 4	A	100	106	anti-parallel
Strand 5	A	109	117	anti-parallel
Strand 6	A	6	16	parallel
Strand 7	A	19	28	anti-parallel
Strand 8	A	78	85	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	158	first strand
Strand 2	A	249	259	anti-parallel
Strand 3	A	211	215	anti-parallel
Strand 4	A	220	224	anti-parallel
Strand 5	A	198	202	parallel
Strand 6	A	164	166	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	158	first strand
Strand 2	A	249	259	anti-parallel
Strand 3	A	242	244	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	271	first strand
Strand 2	A	296	300	parallel
Strand 3	A	363	370	parallel
Strand 4	A	431	435	parallel
Strand 5	A	483	487	parallel
Strand 6	A	501	504	parallel
Strand 7	A	521	523	parallel
Strand 8	A	574	581	parallel
Strand 9	A	265	271	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	306	307	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	341	342	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	63	67	anti-parallel
Strand 3	B	38	42	anti-parallel
Strand 4	B	99	106	anti-parallel
Strand 5	B	109	117	anti-parallel
Strand 6	B	6	16	parallel
Strand 7	B	19	28	anti-parallel
Strand 8	B	78	85	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	72	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	158	first strand
Strand 2	B	250	259	anti-parallel
Strand 3	B	211	215	anti-parallel
Strand 4	B	220	224	anti-parallel
Strand 5	B	198	202	parallel
Strand 6	B	164	166	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	271	first strand
Strand 2	B	296	300	parallel
Strand 3	B	363	370	parallel
Strand 4	B	431	435	parallel
Strand 5	B	483	487	parallel
Strand 6	B	501	504	parallel
Strand 7	B	521	523	parallel
Strand 8	B	574	581	parallel
Strand 9	B	265	271	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	306	307	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	341	342	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6K35

Analysis of interatomic Contacts of Structural Units in PDB entry:
6K35