Analysis of interatomic Contacts of Structural Units in PDB entry:
6K39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K39 entry

There are 2 chains in PDB entry 6K39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 395GLY 545
B
 SER 394GLY 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 6K39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
449 453Right-handed 310
Helix 2
AA2
A
505 509Right-handed 310
Helix 3
AA3
A
511 525Right-handed alpha
Helix 4
AA4
A
525 536Right-handed alpha
Helix 5
AA5
A
537 539Right-handed 310
Helix 6
AA6
B
449 453Right-handed 310
Helix 7
AA7
B
505 509Right-handed 310
Helix 8
AA8
B
511 525Right-handed alpha
Helix 9
AA9
B
525 536Right-handed alpha
Helix 10
AB1
B
537 539Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6K39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 414first strand
Strand 2
A
401 405anti-parallel
Strand 3
A
437 444anti-parallel
Strand 4
A
454 462anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 428first strand
Strand 2
A
474 480anti-parallel
Strand 3
A
486 492anti-parallel
Strand 4
A
498 503anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 414first strand
Strand 2
B
401 405anti-parallel
Strand 3
B
437 444anti-parallel
Strand 4
B
454 462anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 428first strand
Strand 2
B
474 480anti-parallel
Strand 3
B
486 492anti-parallel
Strand 4
B
498 503anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il