Analysis of interatomic Contacts of Structural Units in PDB entry:
6K3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K3D entry

There is 1 chain in PDB entry 6K3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 40LYS 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6K3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 109Right-handed 310
Helix 2
AA2
A
138 145Right-handed alpha
Helix 3
AA3
A
188 195Right-handed alpha
Helix 4
AA4
A
409 414Right-handed alpha
Helix 5
AA5
A
423 428Right-handed 310
Helix 6
AA6
A
448 452Right-handed 310
Helix 7
AA7
A
462 468Right-handed alpha
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There are 7 sheets in PDB entry 6K3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
68 72parallel
Strand 3
A
149 154parallel
Strand 4
A
127 133anti-parallel
Strand 5
A
91 94anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
58 61anti-parallel
Strand 3
A
51 55anti-parallel
Strand 4
A
76 83parallel
Strand 5
A
115 121anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
200 203anti-parallel
Strand 3
A
168 176anti-parallel
Strand 4
A
210 224parallel
Strand 5
A
311 321parallel
Strand 6
A
281 287anti-parallel
Strand 7
A
231 237anti-parallel
Strand 8
A
271 278first strand
Strand 9
A
245 250anti-parallel
Strand 10
A
253 261anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
231 237anti-parallel
Strand 3
A
281 287anti-parallel
Strand 4
A
311 321anti-parallel
Strand 5
A
210 224parallel
Strand 6
A
264 266first strand
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
182 183anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
342 351anti-parallel
Strand 3
A
376 384parallel
Strand 4
A
440 447anti-parallel
Strand 5
A
401 406anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 374first strand
Strand 2
A
471 476parallel
Strand 3
A
455 460anti-parallel
Strand 4
A
391 395anti-parallel
Strand 5
A
432 435anti-parallel
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