Analysis of interatomic Contacts of Structural Units in PDB entry:
6K4E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K4E entry

There are 2 chains in PDB entry 6K4E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 407ASP 663
B
 MET 409ASP 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6K4E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
410 430Right-handed alpha
Helix 2
AA2
A
432 440Right-handed alpha
Helix 3
AA3
A
478 501Right-handed alpha
Helix 4
AA4
A
504 520Right-handed alpha
Helix 5
AA5
A
599 604Right-handed alpha
Helix 6
AA6
A
615 627Right-handed alpha
Helix 7
AA7
A
630 647Right-handed alpha
Helix 8
AA8
B
410 430Right-handed alpha
Helix 9
AA9
B
432 440Right-handed alpha
Helix 10
AB1
B
478 501Right-handed alpha
Helix 11
AB2
B
504 520Right-handed alpha
Helix 12
AB3
B
599 605Right-handed alpha
Helix 13
AB4
B
615 627Right-handed alpha
Helix 14
AB5
B
630 647Right-handed alpha
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There are 6 sheets in PDB entry 6K4E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 449first strand
Strand 2
A
655 662anti-parallel
Strand 3
A
593 598anti-parallel
Strand 4
A
556 559anti-parallel
Strand 5
A
564 567anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 463first strand
Strand 2
A
467 475anti-parallel
Strand 3
A
533 541anti-parallel
Strand 4
A
546 552anti-parallel
Strand 5
A
585 588anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 607first strand
Strand 2
A
612 613anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 449first strand
Strand 2
B
655 662anti-parallel
Strand 3
B
593 598anti-parallel
Strand 4
B
556 559anti-parallel
Strand 5
B
564 567anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 463first strand
Strand 2
B
467 475anti-parallel
Strand 3
B
533 541anti-parallel
Strand 4
B
546 552anti-parallel
Strand 5
B
585 588anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 607first strand
Strand 2
B
612 613anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il