Analysis of interatomic Contacts of Structural Units in PDB entry:
6K52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K52 entry

There is 1 chain in PDB entry 6K52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0PRO 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6K52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
29 40Right-handed alpha
Helix 3
AA3
A
50 55Right-handed 310
Helix 4
AA4
A
58 75Right-handed alpha
Helix 5
AA5
A
102 105Right-handed 310
Helix 6
AA6
A
106 115Right-handed alpha
Helix 7
AA7
A
115 124Right-handed alpha
Helix 8
AA8
A
125 129Right-handed 310
Helix 9
AA9
A
141 148Right-handed alpha
Helix 10
AB1
A
151 173Right-handed alpha
Helix 11
AB2
A
186 191Right-handed alpha
Helix 12
AB3
A
192 209Right-handed alpha
Helix 13
AB4
A
212 216Right-handed 310
Helix 14
AB5
A
248 250Right-handed 310
Helix 15
AB6
A
260 275Right-handed alpha
Helix 16
AB7
A
311 320Right-handed alpha
Helix 17
AB8
A
380 384Right-handed 310
Helix 18
AB9
A
410 420Right-handed alpha
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There are 4 sheets in PDB entry 6K52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
78 84parallel
Strand 3
A
46 48parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
78 84parallel
Strand 3
A
132 137parallel
Strand 4
A
178 183parallel
Strand 5
A
219 222parallel
Strand 6
A
282 286parallel
Strand 7
A
349 353parallel
Strand 8
A
342 346anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
245 246anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
299 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il