Analysis of interatomic Contacts of Structural Units in PDB entry:
6K54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K54 entry

There are 3 chains in PDB entry 6K54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0PRO 427
B
 MET 0PRO 427
C
 MET 0PRO 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6K54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
29 40Right-handed alpha
Helix 3
AA3
A
50 55Right-handed 310
Helix 4
AA4
A
58 75Right-handed alpha
Helix 5
AA5
A
102 105Right-handed 310
Helix 6
AA6
A
106 115Right-handed alpha
Helix 7
AA7
A
115 124Right-handed alpha
Helix 8
AA8
A
125 129Right-handed 310
Helix 9
AA9
A
140 148Right-handed alpha
Helix 10
AB1
A
151 156Right-handed alpha
Helix 11
AB2
A
157 173Right-handed alpha
Helix 12
AB3
A
186 191Right-handed alpha
Helix 13
AB4
A
192 209Right-handed alpha
Helix 14
AB5
A
212 216Right-handed 310
Helix 15
AB6
A
248 250Right-handed 310
Helix 16
AB7
A
260 275Right-handed alpha
Helix 17
AB8
A
311 320Right-handed alpha
Helix 18
AB9
A
380 384Right-handed 310
Helix 19
AC1
A
410 420Right-handed alpha
Helix 20
AC2
B
13 26Right-handed alpha
Helix 21
AC3
B
29 40Right-handed alpha
Helix 22
AC4
B
50 55Right-handed 310
Helix 23
AC5
B
58 75Right-handed alpha
Helix 24
AC6
B
102 105Right-handed 310
Helix 25
AC7
B
106 115Right-handed alpha
Helix 26
AC8
B
115 124Right-handed alpha
Helix 27
AC9
B
125 129Right-handed 310
Helix 28
AD1
B
141 148Right-handed alpha
Helix 29
AD2
B
151 173Right-handed alpha
Helix 30
AD3
B
186 191Right-handed alpha
Helix 31
AD4
B
192 209Right-handed alpha
Helix 32
AD5
B
212 216Right-handed 310
Helix 33
AD6
B
248 250Right-handed 310
Helix 34
AD7
B
260 275Right-handed alpha
Helix 35
AD8
B
311 320Right-handed alpha
Helix 36
AD9
B
380 384Right-handed 310
Helix 37
AE1
B
410 420Right-handed alpha
Helix 38
AE2
C
13 26Right-handed alpha
Helix 39
AE3
C
29 40Right-handed alpha
Helix 40
AE4
C
50 55Right-handed 310
Helix 41
AE5
C
58 75Right-handed alpha
Helix 42
AE6
C
102 105Right-handed 310
Helix 43
AE7
C
106 115Right-handed alpha
Helix 44
AE8
C
115 124Right-handed alpha
Helix 45
AE9
C
125 129Right-handed 310
Helix 46
AF1
C
140 148Right-handed alpha
Helix 47
AF2
C
151 173Right-handed alpha
Helix 48
AF3
C
186 191Right-handed alpha
Helix 49
AF4
C
192 209Right-handed alpha
Helix 50
AF5
C
212 216Right-handed 310
Helix 51
AF6
C
248 250Right-handed 310
Helix 52
AF7
C
260 275Right-handed alpha
Helix 53
AF8
C
311 320Right-handed alpha
Helix 54
AF9
C
380 384Right-handed 310
Helix 55
AG1
C
410 420Right-handed alpha
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There are 12 sheets in PDB entry 6K54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
78 84parallel
Strand 3
A
46 48parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
78 84parallel
Strand 3
A
132 137parallel
Strand 4
A
178 183parallel
Strand 5
A
219 222parallel
Strand 6
A
282 286parallel
Strand 7
A
349 353parallel
Strand 8
A
342 346anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
245 246anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
299 300anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
78 84parallel
Strand 3
B
46 48parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
78 84parallel
Strand 3
B
132 137parallel
Strand 4
B
178 183parallel
Strand 5
B
219 222parallel
Strand 6
B
282 286parallel
Strand 7
B
349 353parallel
Strand 8
B
342 346anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 242first strand
Strand 2
B
245 246anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 296first strand
Strand 2
B
299 300anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 10first strand
Strand 2
C
78 84parallel
Strand 3
C
46 48parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 10first strand
Strand 2
C
78 84parallel
Strand 3
C
132 137parallel
Strand 4
C
178 183parallel
Strand 5
C
219 222parallel
Strand 6
C
282 286parallel
Strand 7
C
349 353parallel
Strand 8
C
342 346anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 242first strand
Strand 2
C
245 246anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
295 296first strand
Strand 2
C
299 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il