Analysis of interatomic Contacts of Structural Units in PDB entry:
6K5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K5E entry

There are 6 chains in PDB entry 6K5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3GLY 257
B
 ASN 2GLY 257
C
 ASP 3GLY 257
D
 ASP 3GLY 257
E
 MET 1GLY 257
F
 ASP 3LEU 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 6K5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 30Right-handed 310
Helix 2
AA2
A
32 37Right-handed alpha
Helix 3
AA3
A
50 54Right-handed 310
Helix 4
AA4
A
60 70Right-handed alpha
Helix 5
AA5
A
82 95Right-handed alpha
Helix 6
AA6
A
121 135Right-handed alpha
Helix 7
AA7
A
135 146Right-handed alpha
Helix 8
AA8
A
153 167Right-handed alpha
Helix 9
AA9
A
172 186Right-handed alpha
Helix 10
AB1
A
215 219Right-handed alpha
Helix 11
AB2
A
236 241Right-handed alpha
Helix 12
AB3
A
241 257Right-handed alpha
Helix 13
AB4
B
25 30Right-handed 310
Helix 14
AB5
B
32 37Right-handed alpha
Helix 15
AB6
B
60 71Right-handed alpha
Helix 16
AB7
B
82 95Right-handed alpha
Helix 17
AB8
B
121 135Right-handed alpha
Helix 18
AB9
B
135 149Right-handed alpha
Helix 19
AC1
B
153 167Right-handed alpha
Helix 20
AC2
B
172 186Right-handed alpha
Helix 21
AC3
B
189 193Right-handed 310
Helix 22
AC4
B
215 219Right-handed alpha
Helix 23
AC5
B
236 241Right-handed alpha
Helix 24
AC6
B
241 257Right-handed alpha
Helix 25
AC7
C
25 30Right-handed 310
Helix 26
AC8
C
32 37Right-handed alpha
Helix 27
AC9
C
60 70Right-handed alpha
Helix 28
AD1
C
82 95Right-handed alpha
Helix 29
AD2
C
121 129Right-handed alpha
Helix 30
AD3
C
140 141Right-handed 310
Helix 31
AD4
C
143 148Right-handed 310
Helix 32
AD5
C
153 167Right-handed alpha
Helix 33
AD6
C
172 186Right-handed alpha
Helix 34
AD7
C
189 193Right-handed 310
Helix 35
AD8
C
236 241Right-handed alpha
Helix 36
AD9
C
241 257Right-handed alpha
Helix 37
AE1
D
25 31Right-handed 310
Helix 38
AE2
D
32 38Right-handed alpha
Helix 39
AE3
D
60 71Right-handed alpha
Helix 40
AE4
D
82 95Right-handed alpha
Helix 41
AE5
D
121 135Right-handed alpha
Helix 42
AE6
D
135 149Right-handed alpha
Helix 43
AE7
D
153 167Right-handed alpha
Helix 44
AE8
D
172 186Right-handed alpha
Helix 45
AE9
D
213 219Right-handed alpha
Helix 46
AF1
D
236 241Right-handed alpha
Helix 47
AF2
D
241 257Right-handed alpha
Helix 48
AF3
E
25 30Right-handed 310
Helix 49
AF4
E
32 37Right-handed alpha
Helix 50
AF5
E
60 70Right-handed alpha
Helix 51
AF6
E
82 95Right-handed alpha
Helix 52
AF7
E
121 135Right-handed alpha
Helix 53
AF8
E
135 147Right-handed alpha
Helix 54
AF9
E
153 167Right-handed alpha
Helix 55
AG1
E
172 186Right-handed alpha
Helix 56
AG2
E
189 193Right-handed 310
Helix 57
AG3
E
213 218Right-handed alpha
Helix 58
AG4
E
236 241Right-handed alpha
Helix 59
AG5
E
241 256Right-handed alpha
Helix 60
AG6
F
25 30Right-handed 310
Helix 61
AG7
F
32 37Right-handed alpha
Helix 62
AG8
F
50 54Right-handed 310
Helix 63
AG9
F
60 70Right-handed alpha
Helix 64
AH1
F
82 95Right-handed alpha
Helix 65
AH2
F
121 132Right-handed alpha
Helix 66
AH3
F
144 149Right-handed alpha
Helix 67
AH4
F
153 165Right-handed alpha
Helix 68
AH5
F
172 186Right-handed alpha
Helix 69
AH6
F
214 219Right-handed alpha
Helix 70
AH7
F
236 241Right-handed alpha
Helix 71
AH8
F
241 256Right-handed alpha
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There are 6 sheets in PDB entry 6K5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
15 19parallel
Strand 4
A
76 81parallel
Strand 5
A
99 105parallel
Strand 6
A
199 204parallel
Strand 7
A
226 230parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
40 45anti-parallel
Strand 3
B
14 19parallel
Strand 4
B
76 81parallel
Strand 5
B
99 105parallel
Strand 6
B
199 204parallel
Strand 7
B
226 230parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 9first strand
Strand 2
C
41 45anti-parallel
Strand 3
C
15 19parallel
Strand 4
C
76 81parallel
Strand 5
C
99 105parallel
Strand 6
C
199 204parallel
Strand 7
C
226 230parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 9first strand
Strand 2
D
40 45anti-parallel
Strand 3
D
14 19parallel
Strand 4
D
76 81parallel
Strand 5
D
99 105parallel
Strand 6
D
199 204parallel
Strand 7
D
226 230parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 9first strand
Strand 2
E
41 45anti-parallel
Strand 3
E
15 19parallel
Strand 4
E
76 81parallel
Strand 5
E
99 105parallel
Strand 6
E
199 204parallel
Strand 7
E
226 230parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 9first strand
Strand 2
F
40 45anti-parallel
Strand 3
F
14 19parallel
Strand 4
F
76 81parallel
Strand 5
F
99 105parallel
Strand 6
F
199 204parallel
Strand 7
F
227 230parallel
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