Analysis of interatomic Contacts of Structural Units in PDB entry:
6K5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K5J entry

There are 2 chains in PDB entry 6K5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10ASP 268
A
 LEU 270VAL 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6K5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
31 40Right-handed alpha
Helix 3
AA3
A
49 53Right-handed 310
Helix 4
AA4
A
55 73Right-handed alpha
Helix 5
AA5
A
101 109Right-handed alpha
Helix 6
AA6
A
110 128Right-handed alpha
Helix 7
AA7
A
149 153Right-handed 310
Helix 8
AA8
A
157 175Right-handed alpha
Helix 9
AA9
A
204 211Right-handed alpha
Helix 10
AB1
A
212 223Right-handed alpha
Helix 11
AB2
A
243 247Right-handed 310
Helix 12
AB3
A
272 277Right-handed alpha
Helix 13
AB4
A
280 292Right-handed alpha
Helix 14
AB5
A
301 318Right-handed alpha
Helix 15
AB6
A
322 340Right-handed alpha
Helix 16
AB7
A
358 373Right-handed alpha
Helix 17
AB8
A
412 420Right-handed alpha
Helix 18
AB9
A
434 448Right-handed alpha
Helix 19
AC1
A
457 460Right-handed 310
Helix 20
AC2
A
461 473Right-handed alpha
Helix 21
AC3
A
486 493Right-handed 310
Helix 22
AC4
A
506 518Right-handed alpha
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There are 3 sheets in PDB entry 6K5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
45 47parallel
Strand 3
A
21 23parallel
Strand 4
A
296 298parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
178 184parallel
Strand 3
A
226 229parallel
Strand 4
A
264 266parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 377first strand
Strand 2
A
499 501anti-parallel
Strand 3
A
478 483parallel
Strand 4
A
450 455parallel
Strand 5
A
390 396parallel
Strand 6
A
424 430parallel
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