Analysis of interatomic Contacts of Structural Units in PDB entry:
6K5L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6K5L entry

There are 2 chains in PDB entry 6K5L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 574
B	GLY 4	LEU 53

There are 52 helices in PDB entry 6K5L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	30	Right-handed alpha
Helix 2	AA2	A	30	37	Right-handed alpha
Helix 3	AA3	A	39	70	Right-handed alpha
Helix 4	AA4	A	71	74	Right-handed 310
Helix 5	AA5	A	75	89	Right-handed alpha
Helix 6	AA6	A	95	111	Right-handed alpha
Helix 7	AA7	A	149	160	Right-handed alpha
Helix 8	AA8	A	168	185	Right-handed alpha
Helix 9	AA9	A	185	192	Right-handed alpha
Helix 10	AB1	A	242	250	Right-handed alpha
Helix 11	AB2	A	263	273	Right-handed alpha
Helix 12	AB3	A	279	287	Right-handed alpha
Helix 13	AB4	A	289	308	Right-handed alpha
Helix 14	AB5	A	349	362	Right-handed alpha
Helix 15	AB6	A	383	385	Right-handed 310
Helix 16	AB7	A	386	397	Right-handed alpha
Helix 17	AB8	A	422	426	Right-handed alpha
Helix 18	AB9	A	430	451	Right-handed alpha
Helix 19	AC1	A	459	461	Right-handed 310
Helix 20	AC2	A	483	485	Right-handed 310
Helix 21	AC3	A	514	516	Right-handed 310
Helix 22	AC4	A	517	523	Right-handed alpha
Helix 23	AC5	A	528	537	Right-handed alpha
Helix 24	AC6	A	538	540	Right-handed 310
Helix 25	AC7	A	541	554	Right-handed alpha
Helix 26	AC8	A	564	567	Right-handed 310
Helix 27	AC9	A	568	573	Right-handed alpha
Helix 28	AD1	B	5	30	Right-handed alpha
Helix 29	AD2	B	30	37	Right-handed alpha
Helix 30	AD3	B	39	68	Right-handed alpha
Helix 31	AD4	B	76	89	Right-handed alpha
Helix 32	AD5	B	95	111	Right-handed alpha
Helix 33	AD6	B	147	160	Right-handed alpha
Helix 34	AD7	B	168	191	Right-handed alpha
Helix 35	AD8	B	242	250	Right-handed alpha
Helix 36	AD9	B	263	273	Right-handed alpha
Helix 37	AE1	B	279	287	Right-handed alpha
Helix 38	AE2	B	289	308	Right-handed alpha
Helix 39	AE3	B	349	362	Right-handed alpha
Helix 40	AE4	B	383	385	Right-handed 310
Helix 41	AE5	B	386	397	Right-handed alpha
Helix 42	AE6	B	422	429	Right-handed alpha
Helix 43	AE7	B	430	451	Right-handed alpha
Helix 44	AE8	B	459	461	Right-handed 310
Helix 45	AE9	B	483	485	Right-handed 310
Helix 46	AF1	B	514	516	Right-handed 310
Helix 47	AF2	B	517	523	Right-handed alpha
Helix 48	AF3	B	528	537	Right-handed alpha
Helix 49	AF4	B	538	540	Right-handed 310
Helix 50	AF5	B	541	554	Right-handed alpha
Helix 51	AF6	B	564	567	Right-handed 310
Helix 52	AF7	B	568	573	Right-handed alpha

There are 14 sheets in PDB entry 6K5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	193	197	anti-parallel
Strand 3	A	206	215	anti-parallel
Strand 4	A	201	203	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	193	197	anti-parallel
Strand 3	A	206	215	anti-parallel
Strand 4	A	218	228	anti-parallel
Strand 5	A	234	236	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	323	327	anti-parallel
Strand 3	A	333	338	anti-parallel
Strand 4	A	407	417	anti-parallel
Strand 5	A	372	381	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	323	327	anti-parallel
Strand 3	A	333	338	anti-parallel
Strand 4	A	407	417	anti-parallel
Strand 5	A	401	404	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	463	465	anti-parallel
Strand 3	A	471	473	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	480	481	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	512	513	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	193	197	anti-parallel
Strand 3	B	206	214	anti-parallel
Strand 4	B	201	203	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	193	197	anti-parallel
Strand 3	B	206	214	anti-parallel
Strand 4	B	219	228	anti-parallel
Strand 5	B	234	236	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	B	323	327	anti-parallel
Strand 3	B	333	338	anti-parallel
Strand 4	B	407	417	anti-parallel
Strand 5	B	372	381	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	B	323	327	anti-parallel
Strand 3	B	333	338	anti-parallel
Strand 4	B	407	417	anti-parallel
Strand 5	B	401	404	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	421	first strand
Strand 2	B	463	465	anti-parallel
Strand 3	B	471	473	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	480	481	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	512	513	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6K5L

Analysis of interatomic Contacts of Structural Units in PDB entry:
6K5L