Analysis of interatomic Contacts of Structural Units in PDB entry:
6K5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6K5P entry

There are 3 chains in PDB entry 6K5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	VAL 536
B	SER 6	VAL 536
C	SER 6	ASN 178

There are 94 helices in PDB entry 6K5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	12	Right-handed 310
Helix 2	AA2	A	19	23	Right-handed 310
Helix 3	AA3	A	33	39	Right-handed alpha
Helix 4	AA4	A	40	47	Right-handed alpha
Helix 5	AA5	A	77	80	Right-handed 310
Helix 6	AA6	A	81	95	Right-handed alpha
Helix 7	AA7	A	112	120	Right-handed alpha
Helix 8	AA8	A	125	129	Right-handed 310
Helix 9	AA9	A	178	194	Right-handed alpha
Helix 10	AB1	A	204	208	Right-handed 310
Helix 11	AB2	A	227	231	Right-handed 310
Helix 12	AB3	A	240	261	Right-handed alpha
Helix 13	AB4	A	273	279	Right-handed alpha
Helix 14	AB5	A	297	303	Right-handed alpha
Helix 15	AB6	A	308	323	Right-handed alpha
Helix 16	AB7	A	340	346	Right-handed alpha
Helix 17	AB8	A	349	360	Right-handed alpha
Helix 18	AB9	A	369	373	Right-handed 310
Helix 19	AC1	A	377	381	Right-handed 310
Helix 20	AC2	A	386	390	Right-handed 310
Helix 21	AC3	A	398	403	Right-handed 310
Helix 22	AC4	A	421	427	Right-handed alpha
Helix 23	AC5	A	431	443	Right-handed alpha
Helix 24	AC6	A	445	451	Right-handed alpha
Helix 25	AC7	B	8	12	Right-handed 310
Helix 26	AC8	B	19	24	Right-handed alpha
Helix 27	AC9	B	33	39	Right-handed alpha
Helix 28	AD1	B	40	47	Right-handed alpha
Helix 29	AD2	B	77	80	Right-handed 310
Helix 30	AD3	B	81	95	Right-handed alpha
Helix 31	AD4	B	112	120	Right-handed alpha
Helix 32	AD5	B	125	129	Right-handed 310
Helix 33	AD6	B	178	194	Right-handed alpha
Helix 34	AD7	B	204	208	Right-handed 310
Helix 35	AD8	B	227	231	Right-handed 310
Helix 36	AD9	B	240	261	Right-handed alpha
Helix 37	AE1	B	273	279	Right-handed alpha
Helix 38	AE2	B	297	303	Right-handed alpha
Helix 39	AE3	B	308	323	Right-handed alpha
Helix 40	AE4	B	340	346	Right-handed alpha
Helix 41	AE5	B	349	360	Right-handed alpha
Helix 42	AE6	B	369	373	Right-handed 310
Helix 43	AE7	B	377	381	Right-handed 310
Helix 44	AE8	B	386	390	Right-handed 310
Helix 45	AE9	B	398	403	Right-handed 310
Helix 46	AF1	B	421	427	Right-handed alpha
Helix 47	AF2	B	431	443	Right-handed alpha
Helix 48	AF3	B	445	451	Right-handed alpha
Helix 49	AF4	C	8	12	Right-handed 310
Helix 50	AF5	C	19	24	Right-handed alpha
Helix 51	AF6	C	33	39	Right-handed alpha
Helix 52	AF7	C	40	47	Right-handed alpha
Helix 53	AF8	C	77	80	Right-handed 310
Helix 54	AF9	C	81	95	Right-handed alpha
Helix 55	AG1	C	112	120	Right-handed alpha
Helix 56	AG2	C	178	194	Right-handed alpha
Helix 57	AG3	C	204	208	Right-handed 310
Helix 58	AG4	C	227	231	Right-handed 310
Helix 59	AG5	C	240	261	Right-handed alpha
Helix 60	AG6	C	273	279	Right-handed alpha
Helix 61	AG7	C	297	303	Right-handed alpha
Helix 62	AG8	C	308	323	Right-handed alpha
Helix 63	AG9	C	340	346	Right-handed alpha
Helix 64	AH1	C	349	360	Right-handed alpha
Helix 65	AH2	C	369	373	Right-handed 310
Helix 66	AH3	C	377	381	Right-handed 310
Helix 67	AH4	C	386	390	Right-handed 310
Helix 68	AH5	C	398	403	Right-handed 310
Helix 69	AH6	C	421	427	Right-handed alpha
Helix 70	AH7	C	431	443	Right-handed alpha
Helix 71	AH8	C	445	451	Right-handed alpha
Helix 72	AH9	D	8	12	Right-handed 310
Helix 73	AI1	D	19	24	Right-handed alpha
Helix 74	AI2	D	33	39	Right-handed alpha
Helix 75	AI3	D	40	47	Right-handed alpha
Helix 76	AI4	D	77	80	Right-handed 310
Helix 77	AI5	D	81	95	Right-handed alpha
Helix 78	AI6	D	112	120	Right-handed alpha
Helix 79	AI7	D	178	194	Right-handed alpha
Helix 80	AI8	D	204	208	Right-handed 310
Helix 81	AI9	D	227	231	Right-handed 310
Helix 82	AJ1	D	240	261	Right-handed alpha
Helix 83	AJ2	D	273	279	Right-handed alpha
Helix 84	AJ3	D	297	303	Right-handed alpha
Helix 85	AJ4	D	308	323	Right-handed alpha
Helix 86	AJ5	D	340	346	Right-handed alpha
Helix 87	AJ6	D	349	360	Right-handed alpha
Helix 88	AJ7	D	369	373	Right-handed 310
Helix 89	AJ8	D	377	381	Right-handed 310
Helix 90	AJ9	D	386	390	Right-handed 310
Helix 91	AK1	D	398	403	Right-handed 310
Helix 92	AK2	D	421	428	Right-handed alpha
Helix 93	AK3	D	431	443	Right-handed alpha
Helix 94	AK4	D	445	451	Right-handed alpha

There are 20 sheets in PDB entry 6K5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	199	202	parallel
Strand 3	A	98	103	parallel
Strand 4	A	51	54	parallel
Strand 5	A	14	18	parallel
Strand 6	A	363	367	parallel
Strand 7	A	330	332	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	71	75	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	161	164	anti-parallel
Strand 3	A	153	156	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	457	first strand
Strand 2	A	462	468	anti-parallel
Strand 3	A	474	480	anti-parallel
Strand 4	A	529	534	anti-parallel
Strand 5	A	499	505	anti-parallel
Strand 6	A	516	518	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	488	first strand
Strand 2	A	522	524	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	294	first strand
Strand 2	B	265	268	parallel
Strand 3	B	199	202	parallel
Strand 4	B	98	103	parallel
Strand 5	B	51	54	parallel
Strand 6	B	14	18	parallel
Strand 7	B	363	367	parallel
Strand 8	B	330	332	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	71	75	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	161	164	anti-parallel
Strand 3	B	153	156	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	457	first strand
Strand 2	B	462	468	anti-parallel
Strand 3	B	474	480	anti-parallel
Strand 4	B	529	534	anti-parallel
Strand 5	B	499	505	anti-parallel
Strand 6	B	516	518	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	488	first strand
Strand 2	B	522	524	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	265	268	parallel
Strand 3	C	199	202	parallel
Strand 4	C	98	103	parallel
Strand 5	C	51	54	parallel
Strand 6	C	14	18	parallel
Strand 7	C	363	367	parallel
Strand 8	C	330	332	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	71	75	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	161	164	anti-parallel
Strand 3	C	153	156	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	457	first strand
Strand 2	C	462	468	anti-parallel
Strand 3	C	474	480	anti-parallel
Strand 4	C	529	534	anti-parallel
Strand 5	C	499	505	anti-parallel
Strand 6	C	516	518	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	488	first strand
Strand 2	C	522	524	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	294	first strand
Strand 2	D	265	268	parallel
Strand 3	D	199	202	parallel
Strand 4	D	98	103	parallel
Strand 5	D	51	54	parallel
Strand 6	D	14	18	parallel
Strand 7	D	363	367	parallel
Strand 8	D	330	332	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	D	71	75	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	161	164	anti-parallel
Strand 3	D	153	156	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	457	first strand
Strand 2	D	462	468	anti-parallel
Strand 3	D	474	480	anti-parallel
Strand 4	D	529	534	anti-parallel
Strand 5	D	499	505	anti-parallel
Strand 6	D	516	518	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	488	first strand
Strand 2	D	522	524	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6K5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6K5P