Analysis of interatomic Contacts of Structural Units in PDB entry:
6K5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K5Z entry

There are 2 chains in PDB entry 6K5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 314
B
 MET 1LYS 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6K5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 94Right-handed 310
Helix 2
AA2
A
95 117Right-handed alpha
Helix 3
AA3
A
129 133Right-handed 310
Helix 4
AA4
A
150 168Right-handed alpha
Helix 5
AA5
A
170 178Right-handed alpha
Helix 6
AA6
A
214 218Right-handed 310
Helix 7
AA7
A
219 241Right-handed alpha
Helix 8
AA8
A
283 290Right-handed alpha
Helix 9
AA9
A
297 311Right-handed alpha
Helix 10
AB1
B
90 94Right-handed 310
Helix 11
AB2
B
95 117Right-handed alpha
Helix 12
AB3
B
129 133Right-handed 310
Helix 13
AB4
B
150 168Right-handed alpha
Helix 14
AB5
B
170 179Right-handed alpha
Helix 15
AB6
B
214 218Right-handed 310
Helix 16
AB7
B
219 241Right-handed alpha
Helix 17
AB8
B
283 290Right-handed alpha
Helix 18
AB9
B
297 313Right-handed alpha
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There are 4 sheets in PDB entry 6K5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
2 5anti-parallel
Strand 3
A
12 15anti-parallel
Strand 4
B
291 294parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
140 146anti-parallel
Strand 4
A
121 128anti-parallel
Strand 5
A
247 252anti-parallel
Strand 6
A
266 271anti-parallel
Strand 7
A
202 208anti-parallel
Strand 8
A
190 193anti-parallel
Strand 9
A
183 186anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
B
12 15parallel
Strand 3
B
2 5anti-parallel
Strand 4
B
70 71anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
76 81anti-parallel
Strand 3
B
140 146anti-parallel
Strand 4
B
121 128anti-parallel
Strand 5
B
247 252anti-parallel
Strand 6
B
266 271anti-parallel
Strand 7
B
202 208anti-parallel
Strand 8
B
190 193anti-parallel
Strand 9
B
183 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il