Analysis of interatomic Contacts of Structural Units in PDB entry:
6K62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K62 entry

There are 2 chains in PDB entry 6K62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 10THR 264
B
 GLU 5THR 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6K62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 45Right-handed alpha
Helix 2
AA2
A
50 60Right-handed alpha
Helix 3
AA3
A
62 67Right-handed alpha
Helix 4
AA4
A
80 82Right-handed 310
Helix 5
AA5
A
83 94Right-handed alpha
Helix 6
AA6
A
131 133Right-handed 310
Helix 7
AA7
A
134 148Right-handed alpha
Helix 8
AA8
A
184 191Right-handed alpha
Helix 9
AA9
A
202 211Right-handed alpha
Helix 10
AB1
A
237 243Right-handed 310
Helix 11
AB2
B
7 44Right-handed alpha
Helix 12
AB3
B
50 60Right-handed alpha
Helix 13
AB4
B
62 67Right-handed alpha
Helix 14
AB5
B
80 82Right-handed 310
Helix 15
AB6
B
83 94Right-handed alpha
Helix 16
AB7
B
131 133Right-handed 310
Helix 17
AB8
B
134 148Right-handed alpha
Helix 18
AB9
B
184 191Right-handed alpha
Helix 19
AC1
B
202 210Right-handed alpha
Helix 20
AC2
B
224 226Right-handed 310
Helix 21
AC3
B
237 242Right-handed 310
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There are 8 sheets in PDB entry 6K62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 118first strand
Strand 2
A
73 79anti-parallel
Strand 3
A
192 201anti-parallel
Strand 4
A
167 176anti-parallel
Strand 5
A
151 152anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 118first strand
Strand 2
A
73 79anti-parallel
Strand 3
A
192 201anti-parallel
Strand 4
A
167 176anti-parallel
Strand 5
A
156 157anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
129 130parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 233first strand
Strand 2
A
216 222anti-parallel
Strand 3
A
255 263anti-parallel
Strand 4
A
246 252anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 118first strand
Strand 2
B
73 79anti-parallel
Strand 3
B
192 201anti-parallel
Strand 4
B
167 176anti-parallel
Strand 5
B
151 152anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 118first strand
Strand 2
B
73 79anti-parallel
Strand 3
B
192 201anti-parallel
Strand 4
B
167 176anti-parallel
Strand 5
B
156 157anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
129 130parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 233first strand
Strand 2
B
216 222anti-parallel
Strand 3
B
255 263anti-parallel
Strand 4
B
246 252anti-parallel
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