Analysis of interatomic Contacts of Structural Units in PDB entry:
6K6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K6R entry

There are 4 chains in PDB entry 6K6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 25LEU 105
A
 ALA 107PRO 147
D
 PHE 25LEU 105
D
 ALA 107PRO 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6K6R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 44Right-handed alpha
Helix 2
AA2
A
56 61Right-handed alpha
Helix 3
AA3
A
78 82Right-handed 310
Helix 4
AA4
A
83 92Right-handed alpha
Helix 5
AA5
A
110 122Right-handed alpha
Helix 6
AA6
A
134 140Right-handed alpha
Helix 7
AA7
A
141 145Right-handed 310
Helix 8
AA8
D
34 44Right-handed alpha
Helix 9
AA9
D
56 61Right-handed alpha
Helix 10
AB1
D
78 82Right-handed 310
Helix 11
AB2
D
83 92Right-handed alpha
Helix 12
AB3
D
109 122Right-handed alpha
Helix 13
AB4
D
134 140Right-handed alpha
Helix 14
AB5
D
141 145Right-handed 310
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There are 2 sheets in PDB entry 6K6R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
127 133parallel
Strand 3
A
101 106parallel
Strand 4
A
49 53parallel
Strand 5
A
69 70parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
127 133parallel
Strand 3
D
101 106parallel
Strand 4
D
49 53parallel
Strand 5
D
69 70parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il