Analysis of interatomic Contacts of Structural Units in PDB entry:
6K6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K6U entry

There are 2 chains in PDB entry 6K6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1285PRO 1422
B
 PRO 1287LEU 1423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6K6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1297 1308Right-handed alpha
Helix 2
AA2
A
1313 1327Right-handed alpha
Helix 3
AA3
A
1382 1385Right-handed 310
Helix 4
AA4
A
1389 1393Right-handed 310
Helix 5
AA5
A
1407 1417Right-handed alpha
Helix 6
AA6
A
1418 1421Right-handed 310
Helix 7
AA7
B
1297 1308Right-handed alpha
Helix 8
AA8
B
1313 1327Right-handed alpha
Helix 9
AA9
B
1382 1384Right-handed 310
Helix 10
AB1
B
1389 1393Right-handed 310
Helix 11
AB2
B
1407 1417Right-handed alpha
Helix 12
AB3
B
1418 1421Right-handed 310
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There are 4 sheets in PDB entry 6K6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1309 1310first strand
Strand 2
A
1369 1375anti-parallel
Strand 3
A
1345 1348anti-parallel
Strand 4
A
1329 1336anti-parallel
Strand 5
A
1288 1295parallel
Strand 6
A
1405 1406anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1341 1342first strand
Strand 2
A
1379 1380anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1309 1310first strand
Strand 2
B
1369 1375anti-parallel
Strand 3
B
1345 1348anti-parallel
Strand 4
B
1329 1336anti-parallel
Strand 5
B
1288 1295parallel
Strand 6
B
1405 1406anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1341 1342first strand
Strand 2
B
1379 1380anti-parallel
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