Analysis of interatomic Contacts of Structural Units in PDB entry:
6K76

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6K76 entry

There are 2 chains in PDB entry 6K76 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	ASP 492
B	MET 1	VAL 490

There are 38 helices in PDB entry 6K76. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	67	Right-handed alpha
Helix 2	AA2	A	69	73	Right-handed 310
Helix 3	AA3	A	106	126	Right-handed alpha
Helix 4	AA4	A	133	145	Right-handed alpha
Helix 5	AA5	A	147	154	Right-handed alpha
Helix 6	AA6	A	162	172	Right-handed alpha
Helix 7	AA7	A	178	183	Right-handed alpha
Helix 8	AA8	A	195	202	Right-handed alpha
Helix 9	AA9	A	205	209	Right-handed 310
Helix 10	AB1	A	239	247	Right-handed alpha
Helix 11	AB2	A	302	312	Right-handed alpha
Helix 12	AB3	A	318	320	Right-handed 310
Helix 13	AB4	A	321	328	Right-handed alpha
Helix 14	AB5	A	365	389	Right-handed alpha
Helix 15	AB6	A	401	405	Right-handed 310
Helix 16	AB7	A	406	418	Right-handed alpha
Helix 17	AB8	A	428	441	Right-handed alpha
Helix 18	AB9	A	447	453	Right-handed alpha
Helix 19	AC1	A	466	485	Right-handed alpha
Helix 20	AC2	B	47	67	Right-handed alpha
Helix 21	AC3	B	69	71	Right-handed 310
Helix 22	AC4	B	106	126	Right-handed alpha
Helix 23	AC5	B	133	144	Right-handed alpha
Helix 24	AC6	B	147	153	Right-handed alpha
Helix 25	AC7	B	161	170	Right-handed alpha
Helix 26	AC8	B	178	183	Right-handed alpha
Helix 27	AC9	B	195	203	Right-handed alpha
Helix 28	AD1	B	223	228	Right-handed alpha
Helix 29	AD2	B	238	247	Right-handed alpha
Helix 30	AD3	B	302	312	Right-handed alpha
Helix 31	AD4	B	318	320	Right-handed 310
Helix 32	AD5	B	321	329	Right-handed alpha
Helix 33	AD6	B	365	390	Right-handed alpha
Helix 34	AD7	B	401	405	Right-handed 310
Helix 35	AD8	B	406	418	Right-handed alpha
Helix 36	AD9	B	428	441	Right-handed alpha
Helix 37	AE1	B	447	455	Right-handed alpha
Helix 38	AE2	B	466	485	Right-handed alpha

There are 13 sheets in PDB entry 6K76. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	33	first strand
Strand 2	A	14	21	anti-parallel
Strand 3	A	6	10	anti-parallel
Strand 4	A	76	80	parallel
Strand 5	A	232	238	parallel
Strand 6	A	216	221	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	98	99	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	157	161	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	211	213	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	193	194	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	287	first strand
Strand 2	A	290	299	anti-parallel
Strand 3	A	263	270	anti-parallel
Strand 4	A	255	259	anti-parallel
Strand 5	A	396	400	parallel
Strand 6	A	420	424	parallel
Strand 7	A	457	461	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	356	358	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	32	first strand
Strand 2	B	15	20	anti-parallel
Strand 3	B	4	10	anti-parallel
Strand 4	B	73	80	parallel
Strand 5	B	232	236	parallel
Strand 6	B	216	221	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	98	99	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	158	160	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	211	213	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	286	first strand
Strand 2	B	291	299	anti-parallel
Strand 3	B	263	270	anti-parallel
Strand 4	B	255	259	anti-parallel
Strand 5	B	397	400	parallel
Strand 6	B	421	424	parallel
Strand 7	B	457	461	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	338	first strand
Strand 2	B	356	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6K76

Analysis of interatomic Contacts of Structural Units in PDB entry:
6K76