Analysis of interatomic Contacts of Structural Units in PDB entry:
6K79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6K79 entry

There are 4 chains in PDB entry 6K79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 2	VAL 491
C	GLU 2	VAL 491
D	MET 1	VAL 491
A	GLU 2	VAL 491

There are 82 helices in PDB entry 6K79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	47	67	Right-handed alpha
Helix 2	AA2	B	69	71	Right-handed 310
Helix 3	AA3	B	106	125	Right-handed alpha
Helix 4	AA4	B	133	145	Right-handed alpha
Helix 5	AA5	B	147	154	Right-handed alpha
Helix 6	AA6	B	162	172	Right-handed alpha
Helix 7	AA7	B	178	183	Right-handed alpha
Helix 8	AA8	B	195	202	Right-handed alpha
Helix 9	AA9	B	205	209	Right-handed 310
Helix 10	AB1	B	223	228	Right-handed alpha
Helix 11	AB2	B	239	247	Right-handed alpha
Helix 12	AB3	B	302	312	Right-handed alpha
Helix 13	AB4	B	320	327	Right-handed alpha
Helix 14	AB5	B	365	390	Right-handed alpha
Helix 15	AB6	B	401	405	Right-handed 310
Helix 16	AB7	B	406	418	Right-handed alpha
Helix 17	AB8	B	428	442	Right-handed alpha
Helix 18	AB9	B	447	455	Right-handed alpha
Helix 19	AC1	B	466	485	Right-handed alpha
Helix 20	AC2	B	486	491	Right-handed alpha
Helix 21	AC3	C	47	67	Right-handed alpha
Helix 22	AC4	C	69	71	Right-handed 310
Helix 23	AC5	C	106	125	Right-handed alpha
Helix 24	AC6	C	133	145	Right-handed alpha
Helix 25	AC7	C	147	154	Right-handed alpha
Helix 26	AC8	C	161	172	Right-handed alpha
Helix 27	AC9	C	178	183	Right-handed alpha
Helix 28	AD1	C	195	202	Right-handed alpha
Helix 29	AD2	C	205	209	Right-handed 310
Helix 30	AD3	C	223	228	Right-handed alpha
Helix 31	AD4	C	239	247	Right-handed alpha
Helix 32	AD5	C	302	312	Right-handed alpha
Helix 33	AD6	C	318	320	Right-handed 310
Helix 34	AD7	C	321	327	Right-handed alpha
Helix 35	AD8	C	365	390	Right-handed alpha
Helix 36	AD9	C	401	405	Right-handed 310
Helix 37	AE1	C	406	418	Right-handed alpha
Helix 38	AE2	C	428	442	Right-handed alpha
Helix 39	AE3	C	447	455	Right-handed alpha
Helix 40	AE4	C	466	485	Right-handed alpha
Helix 41	AE5	C	486	490	Right-handed 310
Helix 42	AE6	D	47	67	Right-handed alpha
Helix 43	AE7	D	69	71	Right-handed 310
Helix 44	AE8	D	106	112	Right-handed alpha
Helix 45	AE9	D	117	125	Right-handed alpha
Helix 46	AF1	D	133	145	Right-handed alpha
Helix 47	AF2	D	147	154	Right-handed alpha
Helix 48	AF3	D	161	172	Right-handed alpha
Helix 49	AF4	D	178	183	Right-handed alpha
Helix 50	AF5	D	195	202	Right-handed alpha
Helix 51	AF6	D	205	209	Right-handed 310
Helix 52	AF7	D	223	228	Right-handed alpha
Helix 53	AF8	D	239	247	Right-handed alpha
Helix 54	AF9	D	302	312	Right-handed alpha
Helix 55	AG1	D	320	328	Right-handed alpha
Helix 56	AG2	D	365	390	Right-handed alpha
Helix 57	AG3	D	401	405	Right-handed 310
Helix 58	AG4	D	406	418	Right-handed alpha
Helix 59	AG5	D	428	442	Right-handed alpha
Helix 60	AG6	D	447	455	Right-handed alpha
Helix 61	AG7	D	466	485	Right-handed alpha
Helix 62	AG8	D	486	491	Right-handed alpha
Helix 63	AG9	A	47	67	Right-handed alpha
Helix 64	AH1	A	69	71	Right-handed 310
Helix 65	AH2	A	106	125	Right-handed alpha
Helix 66	AH3	A	133	143	Right-handed alpha
Helix 67	AH4	A	147	154	Right-handed alpha
Helix 68	AH5	A	161	172	Right-handed alpha
Helix 69	AH6	A	178	182	Right-handed alpha
Helix 70	AH7	A	195	202	Right-handed alpha
Helix 71	AH8	A	205	209	Right-handed 310
Helix 72	AH9	A	223	228	Right-handed alpha
Helix 73	AI1	A	239	247	Right-handed alpha
Helix 74	AI2	A	302	312	Right-handed alpha
Helix 75	AI3	A	320	328	Right-handed alpha
Helix 76	AI4	A	365	390	Right-handed alpha
Helix 77	AI5	A	401	405	Right-handed 310
Helix 78	AI6	A	406	418	Right-handed alpha
Helix 79	AI7	A	428	442	Right-handed alpha
Helix 80	AI8	A	447	455	Right-handed alpha
Helix 81	AI9	A	466	485	Right-handed alpha
Helix 82	AJ1	A	486	490	Right-handed 310

There are 28 sheets in PDB entry 6K79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	14	20	anti-parallel
Strand 3	B	4	10	anti-parallel
Strand 4	B	73	80	parallel
Strand 5	B	232	238	parallel
Strand 6	B	216	221	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	98	99	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	88	first strand
Strand 2	B	158	161	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	211	213	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	193	194	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	286	first strand
Strand 2	B	291	299	anti-parallel
Strand 3	B	263	270	anti-parallel
Strand 4	B	254	259	anti-parallel
Strand 5	B	396	400	parallel
Strand 6	B	421	424	parallel
Strand 7	B	457	461	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	338	first strand
Strand 2	B	356	358	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	33	first strand
Strand 2	C	14	20	anti-parallel
Strand 3	C	4	10	anti-parallel
Strand 4	C	73	80	parallel
Strand 5	C	232	238	parallel
Strand 6	C	216	221	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	98	99	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	88	first strand
Strand 2	C	158	160	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	211	213	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	193	194	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	286	first strand
Strand 2	C	291	299	anti-parallel
Strand 3	C	263	270	anti-parallel
Strand 4	C	254	259	anti-parallel
Strand 5	C	396	400	parallel
Strand 6	C	421	424	parallel
Strand 7	C	457	461	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	338	first strand
Strand 2	C	356	358	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	33	first strand
Strand 2	D	14	20	anti-parallel
Strand 3	D	4	10	anti-parallel
Strand 4	D	73	80	parallel
Strand 5	D	232	238	parallel
Strand 6	D	216	221	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	98	99	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	88	first strand
Strand 2	D	158	160	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	211	213	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	193	194	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	287	first strand
Strand 2	D	290	299	anti-parallel
Strand 3	D	263	270	anti-parallel
Strand 4	D	254	259	anti-parallel
Strand 5	D	396	400	parallel
Strand 6	D	421	424	parallel
Strand 7	D	457	461	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	338	first strand
Strand 2	D	356	358	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	33	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	4	10	anti-parallel
Strand 4	A	73	80	parallel
Strand 5	A	232	238	parallel
Strand 6	A	216	221	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	98	99	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	158	160	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	211	213	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	193	194	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	286	first strand
Strand 2	A	291	299	anti-parallel
Strand 3	A	263	270	anti-parallel
Strand 4	A	254	259	anti-parallel
Strand 5	A	396	400	parallel
Strand 6	A	421	424	parallel
Strand 7	A	457	461	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	356	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6K79

Analysis of interatomic Contacts of Structural Units in PDB entry:
6K79