Analysis of interatomic Contacts of Structural Units in PDB entry:
6K7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K7R entry

There are 2 chains in PDB entry 6K7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2PRO 281
B
 ARG 2MET 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6K7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 19Right-handed alpha
Helix 2
AA2
A
43 46Right-handed 310
Helix 3
AA3
A
56 69Right-handed alpha
Helix 4
AA4
A
74 79Right-handed alpha
Helix 5
AA5
A
90 98Right-handed alpha
Helix 6
AA6
A
110 118Right-handed alpha
Helix 7
AA7
A
135 147Right-handed alpha
Helix 8
AA8
A
162 166Right-handed 310
Helix 9
AA9
A
198 217Right-handed alpha
Helix 10
AB1
A
237 245Right-handed alpha
Helix 11
AB2
A
263 267Right-handed 310
Helix 12
AB3
A
268 270Right-handed 310
Helix 13
AB4
B
5 19Right-handed alpha
Helix 14
AB5
B
43 46Right-handed 310
Helix 15
AB6
B
56 69Right-handed alpha
Helix 16
AB7
B
74 79Right-handed alpha
Helix 17
AB8
B
90 98Right-handed alpha
Helix 18
AB9
B
110 118Right-handed alpha
Helix 19
AC1
B
135 147Right-handed alpha
Helix 20
AC2
B
162 166Right-handed 310
Helix 21
AC3
B
197 217Right-handed alpha
Helix 22
AC4
B
237 245Right-handed alpha
Helix 23
AC5
B
263 267Right-handed 310
Helix 24
AC6
B
268 270Right-handed 310
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There are 4 sheets in PDB entry 6K7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
30 41anti-parallel
Strand 3
A
220 234anti-parallel
Strand 4
A
183 194parallel
Strand 5
A
172 180anti-parallel
Strand 6
A
154 156anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
272 275anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
30 41anti-parallel
Strand 3
B
220 234anti-parallel
Strand 4
B
183 194parallel
Strand 5
B
172 180anti-parallel
Strand 6
B
154 156anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
272 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il