Analysis of interatomic Contacts of Structural Units in PDB entry:
6K7S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K7S entry

There are 2 chains in PDB entry 6K7S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 289
B
 MET 1ALA 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6K7S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 19Right-handed alpha
Helix 2
AA2
A
43 46Right-handed 310
Helix 3
AA3
A
56 70Right-handed alpha
Helix 4
AA4
A
74 79Right-handed alpha
Helix 5
AA5
A
110 118Right-handed alpha
Helix 6
AA6
A
135 147Right-handed alpha
Helix 7
AA7
A
162 166Right-handed 310
Helix 8
AA8
A
197 217Right-handed alpha
Helix 9
AA9
A
237 245Right-handed alpha
Helix 10
AB1
A
263 267Right-handed 310
Helix 11
AB2
A
268 270Right-handed 310
Helix 12
AB3
B
4 19Right-handed alpha
Helix 13
AB4
B
43 46Right-handed 310
Helix 14
AB5
B
56 69Right-handed alpha
Helix 15
AB6
B
73 79Right-handed alpha
Helix 16
AB7
B
90 97Right-handed alpha
Helix 17
AB8
B
110 118Right-handed alpha
Helix 18
AB9
B
135 147Right-handed alpha
Helix 19
AC1
B
162 166Right-handed 310
Helix 20
AC2
B
197 217Right-handed alpha
Helix 21
AC3
B
237 245Right-handed alpha
Helix 22
AC4
B
263 267Right-handed 310
Helix 23
AC5
B
268 270Right-handed 310
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There are 4 sheets in PDB entry 6K7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
30 41anti-parallel
Strand 3
A
220 234anti-parallel
Strand 4
A
183 194parallel
Strand 5
A
172 180anti-parallel
Strand 6
A
154 156anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
272 275anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
30 41anti-parallel
Strand 3
B
220 234anti-parallel
Strand 4
B
183 194parallel
Strand 5
B
172 180anti-parallel
Strand 6
B
154 156anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
272 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il