Analysis of interatomic Contacts of Structural Units in PDB entry:
6K83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6K83 entry

There are 8 chains in PDB entry 6K83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 131	GLN 410
A	SER 131	GLN 410
C	SER 131	GLN 410
D	SER 131	GLN 410
E	SER 131	GLN 410
F	SER 131	GLN 410
G	SER 131	GLN 410
H	SER 131	GLN 410

There are 96 helices in PDB entry 6K83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	139	151	Right-handed alpha
Helix 2	AA2	B	164	169	Right-handed 310
Helix 3	AA3	B	188	201	Right-handed alpha
Helix 4	AA4	B	202	205	Right-handed 310
Helix 5	AA5	B	237	249	Right-handed alpha
Helix 6	AA6	B	250	252	Right-handed 310
Helix 7	AA7	B	260	274	Right-handed alpha
Helix 8	AA8	B	301	315	Right-handed alpha
Helix 9	AA9	B	331	340	Right-handed alpha
Helix 10	AB1	B	354	360	Right-handed alpha
Helix 11	AB2	B	363	377	Right-handed alpha
Helix 12	AB3	B	378	389	Right-handed alpha
Helix 13	AB4	A	139	151	Right-handed alpha
Helix 14	AB5	A	164	169	Right-handed 310
Helix 15	AB6	A	188	199	Right-handed alpha
Helix 16	AB7	A	201	205	Right-handed 310
Helix 17	AB8	A	236	249	Right-handed alpha
Helix 18	AB9	A	250	252	Right-handed 310
Helix 19	AC1	A	260	274	Right-handed alpha
Helix 20	AC2	A	301	315	Right-handed alpha
Helix 21	AC3	A	331	340	Right-handed alpha
Helix 22	AC4	A	354	359	Right-handed alpha
Helix 23	AC5	A	363	377	Right-handed alpha
Helix 24	AC6	A	378	389	Right-handed alpha
Helix 25	AC7	C	139	151	Right-handed alpha
Helix 26	AC8	C	164	169	Right-handed 310
Helix 27	AC9	C	188	202	Right-handed alpha
Helix 28	AD1	C	203	205	Right-handed 310
Helix 29	AD2	C	237	249	Right-handed alpha
Helix 30	AD3	C	250	252	Right-handed 310
Helix 31	AD4	C	260	274	Right-handed alpha
Helix 32	AD5	C	301	315	Right-handed alpha
Helix 33	AD6	C	331	340	Right-handed alpha
Helix 34	AD7	C	354	360	Right-handed alpha
Helix 35	AD8	C	363	376	Right-handed alpha
Helix 36	AD9	C	378	389	Right-handed alpha
Helix 37	AE1	D	139	151	Right-handed alpha
Helix 38	AE2	D	164	169	Right-handed 310
Helix 39	AE3	D	188	201	Right-handed alpha
Helix 40	AE4	D	202	205	Right-handed 310
Helix 41	AE5	D	237	249	Right-handed alpha
Helix 42	AE6	D	250	252	Right-handed 310
Helix 43	AE7	D	260	274	Right-handed alpha
Helix 44	AE8	D	301	315	Right-handed alpha
Helix 45	AE9	D	331	340	Right-handed alpha
Helix 46	AF1	D	354	360	Right-handed alpha
Helix 47	AF2	D	363	377	Right-handed alpha
Helix 48	AF3	D	378	389	Right-handed alpha
Helix 49	AF4	E	139	151	Right-handed alpha
Helix 50	AF5	E	164	169	Right-handed 310
Helix 51	AF6	E	188	201	Right-handed alpha
Helix 52	AF7	E	202	205	Right-handed 310
Helix 53	AF8	E	237	249	Right-handed alpha
Helix 54	AF9	E	250	252	Right-handed 310
Helix 55	AG1	E	260	274	Right-handed alpha
Helix 56	AG2	E	301	315	Right-handed alpha
Helix 57	AG3	E	331	340	Right-handed alpha
Helix 58	AG4	E	354	360	Right-handed alpha
Helix 59	AG5	E	363	377	Right-handed alpha
Helix 60	AG6	E	378	389	Right-handed alpha
Helix 61	AG7	F	139	151	Right-handed alpha
Helix 62	AG8	F	164	169	Right-handed 310
Helix 63	AG9	F	188	201	Right-handed alpha
Helix 64	AH1	F	202	205	Right-handed 310
Helix 65	AH2	F	237	249	Right-handed alpha
Helix 66	AH3	F	250	252	Right-handed 310
Helix 67	AH4	F	260	274	Right-handed alpha
Helix 68	AH5	F	301	315	Right-handed alpha
Helix 69	AH6	F	331	340	Right-handed alpha
Helix 70	AH7	F	354	359	Right-handed alpha
Helix 71	AH8	F	363	377	Right-handed alpha
Helix 72	AH9	F	378	389	Right-handed alpha
Helix 73	AI1	G	139	150	Right-handed alpha
Helix 74	AI2	G	164	169	Right-handed 310
Helix 75	AI3	G	188	202	Right-handed alpha
Helix 76	AI4	G	203	205	Right-handed 310
Helix 77	AI5	G	237	249	Right-handed alpha
Helix 78	AI6	G	250	252	Right-handed 310
Helix 79	AI7	G	260	274	Right-handed alpha
Helix 80	AI8	G	301	315	Right-handed alpha
Helix 81	AI9	G	331	340	Right-handed alpha
Helix 82	AJ1	G	354	359	Right-handed alpha
Helix 83	AJ2	G	363	377	Right-handed alpha
Helix 84	AJ3	G	378	389	Right-handed alpha
Helix 85	AJ4	H	139	151	Right-handed alpha
Helix 86	AJ5	H	164	169	Right-handed 310
Helix 87	AJ6	H	188	201	Right-handed alpha
Helix 88	AJ7	H	202	205	Right-handed 310
Helix 89	AJ8	H	237	249	Right-handed alpha
Helix 90	AJ9	H	250	252	Right-handed 310
Helix 91	AK1	H	260	274	Right-handed alpha
Helix 92	AK2	H	301	315	Right-handed alpha
Helix 93	AK3	H	331	340	Right-handed alpha
Helix 94	AK4	H	354	360	Right-handed alpha
Helix 95	AK5	H	363	377	Right-handed alpha
Helix 96	AK6	H	378	389	Right-handed alpha

There are 15 sheets in PDB entry 6K83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	212	215	anti-parallel
Strand 3	B	156	162	parallel
Strand 4	B	279	285	parallel
Strand 5	B	319	325	parallel
Strand 6	B	349	353	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	235	236	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	212	215	anti-parallel
Strand 3	A	156	162	parallel
Strand 4	A	279	285	parallel
Strand 5	A	319	325	parallel
Strand 6	A	349	353	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	212	215	anti-parallel
Strand 3	C	156	162	parallel
Strand 4	C	279	285	parallel
Strand 5	C	319	325	parallel
Strand 6	C	349	353	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	210	first strand
Strand 2	C	235	236	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	227	first strand
Strand 2	D	212	215	anti-parallel
Strand 3	D	156	162	parallel
Strand 4	D	279	285	parallel
Strand 5	D	319	325	parallel
Strand 6	D	349	353	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	210	first strand
Strand 2	D	235	236	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	E	212	215	anti-parallel
Strand 3	E	156	162	parallel
Strand 4	E	279	285	parallel
Strand 5	E	319	325	parallel
Strand 6	E	349	353	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	210	first strand
Strand 2	E	235	236	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	227	first strand
Strand 2	F	212	215	anti-parallel
Strand 3	F	156	162	parallel
Strand 4	F	279	285	parallel
Strand 5	F	319	325	parallel
Strand 6	F	349	353	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	210	first strand
Strand 2	F	235	236	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	227	first strand
Strand 2	G	212	215	anti-parallel
Strand 3	G	156	162	parallel
Strand 4	G	279	285	parallel
Strand 5	G	319	325	parallel
Strand 6	G	349	353	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	209	210	first strand
Strand 2	G	235	236	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	225	227	first strand
Strand 2	H	212	215	anti-parallel
Strand 3	H	156	162	parallel
Strand 4	H	279	285	parallel
Strand 5	H	319	325	parallel
Strand 6	H	349	353	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	209	210	first strand
Strand 2	H	235	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6K83

Analysis of interatomic Contacts of Structural Units in PDB entry:
6K83