Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K8C entry

There is 1 chain in PDB entry 6K8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5LYS 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6K8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 18Right-handed alpha
Helix 2
AA2
A
27 42Right-handed alpha
Helix 3
AA3
A
57 71Right-handed alpha
Helix 4
AA4
A
86 89Right-handed 310
Helix 5
AA5
A
99 111Right-handed alpha
Helix 6
AA6
A
113 119Right-handed alpha
Helix 7
AA7
A
120 133Right-handed alpha
Helix 8
AA8
A
146 155Right-handed 310
Helix 9
AA9
A
176 186Right-handed alpha
Helix 10
AB1
A
198 212Right-handed alpha
Helix 11
AB2
A
224 235Right-handed alpha
Helix 12
AB3
A
240 255Right-handed alpha
Helix 13
AB4
A
289 304Right-handed alpha
Helix 14
AB5
A
319 328Right-handed alpha
Helix 15
AB6
A
346 358Right-handed alpha
Helix 16
AB7
A
378 391Right-handed alpha
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There are 2 sheets in PDB entry 6K8C. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
91 93anti-parallel
Strand 3
A
76 79anti-parallel
Strand 4
A
138 142parallel
Strand 5
A
48 53parallel
Strand 6
A
159 162parallel
Strand 7
A
191 194parallel
Strand 8
A
215 218parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
282 285anti-parallel
Strand 3
A
373 376parallel
Strand 4
A
308 312parallel
Strand 5
A
331 336parallel
Strand 6
A
361 363parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il